Homologs of PP_1106 from Pseudomonas putida KT2440

conserved protein of unknown function
SEED: mRNA 3-end processing factor
KEGG: putative mRNA 3-end processing factor

56 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_1106 conserved protein of unknown function insig. 100 100
o Pseudomonas sp. BP01 JOY50_RS24065 ligase-associated DNA damage response exonuclease insig. 93 100
o Pseudomonas sp. S08-1 OH686_06055 putative exonuclease, DNA ligase-associated insig. 85 99
o Pseudomonas syringae pv. syringae B728a Psyr_3872 conserved hypothetical protein insig. 81 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3872 conserved hypothetical protein insig. 81 100
o Pseudomonas stutzeri RCH2 Psest_1649 Predicted exonuclease of the beta-lactamase fold involved in RNA processing insig. 79 99
o Pseudomonas simiae WCS417 PS417_06425 exonuclease insig. 85 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01455 hypothetical protein cofit 85 98
o Pseudomonas fluorescens SBW25 PFLU_RS06490 ligase-associated DNA damage response exonuclease insig. 84 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06490 ligase-associated DNA damage response exonuclease insig. 84 98
o Pseudomonas orientalis W4I3 QF045_RS09270 ligase-associated DNA damage response exonuclease insig. 84 98
o Pseudomonas fluorescens FW300-N2C3 AO356_05485 DNA ligase-associated DEXH box helicase insig. 83 99
o Pseudomonas sp. DMC3 GFF2149 hypothetical protein insig. 81 100
o Pseudomonas sp. RS175 PFR28_00509 hypothetical protein insig. 81 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3181 mRNA 3-end processing factor insig. 78 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2956 mRNA 3-end processing factor insig. 81 96
o Variovorax sp. SCN45 GFF3696 mRNA 3-end processing factor insig. 75 97
o Variovorax sp. OAS795 ABID97_RS00395 ligase-associated DNA damage response exonuclease insig. 76 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS21350 ligase-associated DNA damage response exonuclease insig. 73 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1242 mRNA 3-end processing factor insig. 70 97
o Herbaspirillum seropedicae SmR1 HSERO_RS11400 exonuclease sig. 69 100
o Paraburkholderia graminis OAS925 ABIE53_005969 putative mRNA 3-end processing factor insig. 71 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02820 putative mRNA 3-end processing factor insig. 69 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS20345 ligase-associated DNA damage response exonuclease insig. 72 96
o Burkholderia phytofirmans PsJN BPHYT_RS26305 exonuclease insig. 71 97
o Acidovorax sp. GW101-3H11 Ac3H11_4921 mRNA 3-end processing factor insig. 69 91
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20350 ligase-associated DNA damage response exonuclease insig. 54 96
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09100 DNA ligase-associated DEXH box helicase insig. 48 99
o Cellulophaga baltica 18 M666_RS06770 ligase-associated DNA damage response exonuclease insig. 50 94
o Lysobacter sp. OAE881 ABIE51_RS03750 ligase-associated DNA damage response exonuclease insig. 58 97
o Dinoroseobacter shibae DFL-12 Dshi_2587 DNA damage response exonuclease, associated with a ligase (from data) strong 54 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3654.1 hypothetical protein insig. 56 97
o Azospirillum sp. SherDot2 MPMX19_02216 hypothetical protein insig. 48 95
o Xanthobacter sp. DMC5 GFF152 hypothetical protein insig. 45 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08710 ligase-associated DNA damage response exonuclease insig. 46 97
o Azospirillum brasilense Sp245 AZOBR_RS09955 beta-lactamase insig. 48 93
o Rhodopseudomonas palustris CGA009 TX73_004140 ligase-associated DNA damage response exonuclease insig. 45 97
o Rhizobium sp. OAE497 ABIE40_RS04630 ligase-associated DNA damage response exonuclease insig. 44 97
o Sinorhizobium meliloti 1021 SMc03176 hypothetical protein insig. 46 96
o Agrobacterium fabrum C58 Atu0839 hypothetical protein sig. 44 97
o Caulobacter crescentus NA1000 CCNA_03759 mRNA 3'-end processing factor sig. 44 97
o Caulobacter crescentus NA1000 Δfur CCNA_03759 mRNA 3'-end processing factor cofit 44 97
o Bosea sp. OAE506 ABIE41_RS24100 ligase-associated DNA damage response exonuclease insig. 43 99
o Sphingobium sp. HT1-2 GFF106 mRNA 3-end processing factor insig. 42 96
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3852 putative exonuclease, DNA ligase-associated insig. 41 92
o Alteromonas macleodii MIT1002 MIT1002_03767 Ribonuclease insig. 37 95
o Phaeobacter inhibens DSM 17395 PGA1_262p00510 Predicted exonuclease of the beta-lactamase fold involved in RNA processing sig. 37 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13225 exonuclease sig. 34 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14095 MBL fold metallo-hydrolase insig. 33 92
  Ralstonia solanacearum GMI1000 RS_RS00995 MBL fold metallo-hydrolase insig. 33 35
  Ralstonia sp. UNC404CL21Col ABZR87_RS19990 MBL fold metallo-hydrolase insig. 30 35
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01950 MBL fold metallo-hydrolase insig. 30 30
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11070 MBL fold metallo-hydrolase insig. 31 30
  Marinobacter adhaerens HP15 HP15_1324 metallo-beta-lactamase family protein insig. 28 48
  Burkholderia phytofirmans PsJN BPHYT_RS27805 RNA-metabolising metallo-beta-lactamase insig. 33 29
  Sphingobium sp. HT1-2 GFF5006 Metallo-beta-lactamase family protein, RNA-specific cofit 28 31