Homologs of csrD from Erwinia tracheiphila SCR3

csrD: RNase E specificity factor CsrD
SEED: RNase E specificity factor CsrD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Erwinia tracheiphila SCR3 LU632_RS21455 csrD RNase E specificity factor CsrD insig. 100 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13555 csrD RNase E specificity factor CsrD cofit 100 100
o Erwinia amylovora T8 OLJFJH_06905 RNase E specificity factor CsrD strong 65 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11025 RNase E specificity factor CsrD cofit 57 100
o Pantoea sp. MT58 IAI47_02430 RNase E specificity factor CsrD insig. 56 100
o Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD insig. 55 100
o Escherichia coli Nissle 1917 ECOLIN_RS18635 RNase E specificity factor CsrD cofit 52 100
o Escherichia fergusonii Becca EFB2_00579 RNase E specificity factor CsrD insig. 52 100
o Escherichia coli ECOR38 HEPCGN_16585 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli ECRC100 OKFHMN_17720 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli ECRC101 MCAODC_08240 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli ECRC102 NIAGMN_15480 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli ECRC98 JDDGAC_21345 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli ECRC99 KEDOAH_10430 csrD RNase E specificity factor CsrD no data 51 100
o Escherichia coli ECOR27 NOLOHH_09505 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli BL21 ECD_03111 targeting factor for csrBC sRNA degradation cofit 51 100
o Escherichia coli ECRC62 BNILDI_02015 csrD RNase E specificity factor CsrD cofit 51 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00453 RNase E specificity factor CsrD insig. 51 100
o Escherichia coli BW25113 b3252 yhdA conserved inner membrane protein (NCBI) sig. 51 100
o Enterobacter asburiae PDN3 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain cofit 51 100
o Enterobacter sp. TBS_079 MPMX20_04158 RNase E specificity factor CsrD strong 51 100
o Klebsiella pneumoniae MKP103 KDGMDA_06280 Lipoprotein strong 51 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2133 RNase E specificity factor CsrD strong 51 100
o Pectobacterium carotovorum WPP14 HER17_RS20175 RNase E specificity factor CsrD insig. 53 100
o Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 50 100
o Dickeya dianthicola 67-19 HGI48_RS01345 RNase E specificity factor CsrD cofit 52 100
o Dickeya dianthicola ME23 DZA65_RS01405 RNase E specificity factor CsrD sig. 52 100
o Dickeya dadantii 3937 DDA3937_RS01425 RNase E specificity factor CsrD cofit 52 100
o Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 50 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_02100 RNase E specificity factor CsrD cofit 31 97
  Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 31 76
  Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 31 77
o Shewanella loihica PV-4 Shew_0384 regulatory protein CsrD (RefSeq) strong 28 97
o Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 27 97
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 24 67
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 24 67
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 77
  Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 23 80
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 24 80
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 24 65
  Pseudomonas segetis P6 MPMX49_02940 hypothetical protein insig. 24 80
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 24 80
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 22 80
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 66
  Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 21 80
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 24 65
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 23 81
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 27 67
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 23 66
  Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 21 80
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00514 RNase E specificity factor CsrD cofit 21 81
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 24 65
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 21 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2166 Sensory box/GGDEF family protein insig. 26 66
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 21 81
  Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 25 64
  Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 21 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04056 hypothetical protein cofit 25 71
  Pseudomonas putida KT2440 PP_1761 diguanylate cyclase with phosphodiesterase domain strong 26 66
  Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 24 65
  Pseudomonas fluorescens FW300-N2E3 AO353_02120 hypothetical protein strong 25 66
  Pseudomonas simiae WCS417 PS417_19145 membrane protein strong 25 69
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 21 81
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 23 80
  Pseudomonas sp. DMC3 GFF4687 hypothetical protein cofit 25 66
  Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 22 67
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 24 65
  Dechlorosoma suillum PS Dsui_2894 diguanylate cyclase (GGDEF) domain-containing protein cofit 25 72
o Pseudomonas aeruginosa PA14 IKLFDK_06810 Diguanylate cyclase/phosphodiesterase insig. 24 66
  Dechlorosoma suillum PS Dsui_2365 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 25 66
  Pseudomonas sp. RS175 PFR28_00896 hypothetical protein insig. 26 66
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_361 Sensory box/GGDEF family protein insig. 25 66
  Pseudomonas fluorescens SBW25 PFLU_RS21140 EAL domain-containing protein cofit 25 66
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21140 EAL domain-containing protein strong 25 66
  Pseudomonas sp. SVBP6 COO64_RS06790 EAL domain-containing protein cofit 25 69
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 26 66
  Pseudomonas sp. BP01 JOY50_RS16180 EAL domain-containing protein insig. 25 66
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 25 63
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 23 66
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 25 65
  Pseudomonas fluorescens FW300-N2C3 AO356_03515 hypothetical protein cofit 25 66
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2530 Sensory box/GGDEF family protein strong 25 66
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS06870 cyclic di-GMP phosphodiesterase cofit 24 70
  Pseudomonas stutzeri RCH2 Psest_0491 PAS domain S-box/diguanylate cyclase (GGDEF) domain strong 25 63
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 24 63
  Pantoea sp. MT58 IAI47_09305 cyclic di-GMP phosphodiesterase strong 24 70
  Shewanella oneidensis MR-1 SO0427 sensory box protein (NCBI ptt file) sig. 23 68
  Alteromonas macleodii MIT1002 MIT1002_01199 Bacteriophytochrome cph2 insig. 23 67
  Acidovorax sp. GW101-3H11 Ac3H11_4486 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 22 66
  Acidovorax sp. GW101-3H11 Ac3H11_2715 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 22 67
  Rhodopseudomonas palustris CGA009 TX73_002030 EAL domain-containing protein insig. 25 66
  Dechlorosoma suillum PS Dsui_1564 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 24 68
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 23 67
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 23 65
  Shewanella sp. ANA-3 Shewana3_0429 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 23 71
  Pseudomonas sp. S08-1 OH686_09550 PAS/PAC domain insig. 23 65
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 25 63
  Synechococcus elongatus PCC 7942 Synpcc7942_1716 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) strong 22 63
  Pseudomonas sp. DMC3 GFF3964 hypothetical protein insig. 23 66
  Rhizobium sp. OAE497 ABIE40_RS13070 EAL domain-containing protein insig. 22 68