Homologs of LRK54_RS03835 from Rhodanobacter denitrificans FW104-10B01

RNA polymerase sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS03835 RNA polymerase sigma factor strong 100 100
o Rhodanobacter denitrificans MT42 LRK55_RS03585 RNA polymerase sigma factor strong 98 100
o Rhodanobacter sp. FW510-T8 OKGIIK_10685 rpoE RNA polymerase sigma factor cofit 93 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS22130 RNA polymerase sigma factor insig. 82 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4203.1 RNA polymerase sigma-54 factor RpoN insig. 58 89
o Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 56 90
o Dechlorosoma suillum PS Dsui_3530 DNA-directed RNA polymerase specialized sigma subunit, sigma24 insig. 51 87
o Cupriavidus basilensis FW507-4G11 RR42_RS05430 DNA-directed RNA polymerase sigma-70 factor strong 46 87
o Ralstonia solanacearum PSI07 RPSI07_RS14250 RNA polymerase sigma factor cofit 45 87
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03055 RNA polymerase sigma factor strong 45 85
o Ralstonia solanacearum UW163 UW163_RS10670 RNA polymerase sigma factor insig. 45 85
o Ralstonia sp. UNC404CL21Col ABZR87_RS14960 RNA polymerase sigma factor insig. 45 87
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04550 RNA polymerase, sigma-24 subunit, RpoE strong 45 86
o Paraburkholderia sabiae LMG 24235 QEN71_RS24230 RNA polymerase sigma factor insig. 45 83
o Burkholderia phytofirmans PsJN BPHYT_RS06540 RNA polymerase sigma70 factor strong 44 86
o Variovorax sp. OAS795 ABID97_RS14880 RNA polymerase sigma factor cofit 43 89
  Paraburkholderia graminis OAS925 ABIE53_001573 RNA polymerase sigma-70 factor (ECF subfamily) strong 44 86
o Acidovorax sp. GW101-3H11 Ac3H11_524 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like cofit 43 89
o Herbaspirillum seropedicae SmR1 HSERO_RS08645 RNA polymerase sigma70 factor sig. 41 87
o Ralstonia solanacearum GMI1000 RS_RS10425 RNA polymerase sigma factor cofit 44 87
o Variovorax sp. SCN45 GFF1157 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like insig. 42 89
  Acinetobacter radioresistens SK82 MPMX26_02199 hypothetical protein no data 38 87
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 32 75
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 30 88
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 34 76
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0726 RNA polymerase sigma factor, sigma-70 family insig. 30 89
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 28 95
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 30 75
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 29 79
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 26 91
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 31 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 28 78
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01445 sigma-70 family RNA polymerase sigma factor insig. 30 83
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 29 79
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2751 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 23 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor cofit 28 89
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 28 79
  Acidovorax sp. GW101-3H11 Ac3H11_916 RNA polymerase sigma-70 factor insig. 39 46
  Variovorax sp. SCN45 GFF7651 putative sigma factor no data 74 18
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 33 82
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 31 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 31 76
  Variovorax sp. OAS795 ABID97_RS28845 RNA polymerase sigma factor insig. 31 80
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 30 77
  Bacteroides ovatus ATCC 8483 BACOVA_01066 hypothetical protein insig. 25 77
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 26 88
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 26 88
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 26 88
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 26 88
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23375 RNA polymerase sigma factor insig. 32 79
  Ralstonia solanacearum UW163 UW163_RS16625 RNA polymerase sigma factor insig. 32 79
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 30 76
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04645 sigma-70 family RNA polymerase sigma factor cofit 28 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 31 82
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 30 77
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 30 90
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 26 87
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 40 45
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 30 88
  Variovorax sp. SCN45 GFF4558 RNA polymerase ECF-type sigma factor insig. 31 96
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 30 72
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 30 78
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 30 77
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 28 79
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 36 38
  Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 34 60
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 28 72
  Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 33 83
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 28 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 28 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 25 91
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 25 91
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 25 91
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 25 91
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0584 RNA polymerase sigma factor, sigma-70 family insig. 36 41
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 27 78
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 25 91
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 38
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 28 92
  Lysobacter sp. OAE881 ABIE51_RS18540 sigma-70 family RNA polymerase sigma factor insig. 25 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 24 78
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 33 86
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 33 85
  Rhodanobacter sp. FW510-T8 OKGIIK_12575 rpoE RNA polymerase subunit sigma-24 insig. 32 77
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 29 76
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 27 79
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 27 98
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13970 RNA polymerase sigma factor insig. 25 78
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 25 92
  Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 30 98
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 35 48
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3517 RNA polymerase sigma-70 factor insig. 33 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 91
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 29 98
  Mycobacterium tuberculosis H37Rv Rv3414c Probable alternative RNA polymerase sigma-D factor SigD sig. 28 75
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09390 sigma-70 family RNA polymerase sigma factor insig. 27 74
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 27 75
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 27 75
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 27 75
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 27 75