Homologs of GFF2028 from Sphingobium sp. HT1-2

hypothetical protein
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 100 100
o Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 49 95
o Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 53 85
o Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 51 88
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 49 87
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 47 86
  Sphingobium sp. HT1-2 GFF4551 hypothetical protein cofit 49 83
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 43 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 41 96
o Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 42 96
o Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 45 92
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 42 87
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 45 93
o Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 42 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 44 94
o Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 43 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 84
o Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 45 94
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 42 97
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 43 84
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 42 97
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 42 86
o Dechlorosoma suillum PS Dsui_1302 RNA polymerase sigma factor, sigma-70 family cofit 44 92
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 42 97
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 39 85
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 39 88
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 45 84
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05043 RNA polymerase sigma-70 factor, ECF subfamily no data 42 90
o Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 41 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 41 96
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 41 94
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 37 90
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 43 84
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 42 88
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 44 87
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 41 99
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 40 93
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 39 92
  Paraburkholderia sabiae LMG 24235 QEN71_RS36705 RNA polymerase sigma factor insig. 40 91
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 39 84
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 38 86
  Pseudomonas sp. SVBP6 COO64_RS10855 sigma-70 family RNA polymerase sigma factor insig. 44 87
o Pseudomonas sp. RS175 PFR28_01251 ECF RNA polymerase sigma factor EcfG insig. 43 94
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 40 87
  Pseudomonas sp. BP01 JOY50_RS05860 sigma-70 family RNA polymerase sigma factor no data 41 87
  Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 38 99
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 45 87
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 40 92
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 41 87
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 40 85
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 38 92
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 38 92
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 43 84
o Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 38 94
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 37 95
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 37 95
o Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 42 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 39 88
  Azospirillum sp. SherDot2 MPMX19_00923 hypothetical protein insig. 41 87
o Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 39 94
  Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 36 91
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 39 87
o Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 40 99
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 38 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 38 98
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 39 82
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 35 90
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03722 ECF RNA polymerase sigma factor EcfG no data 42 88
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 38 86
o Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 35 94
  Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 40 94
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 40 94
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 37 85
o Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 36 94
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 35 84
  Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 39 82
  Rhizobium sp. OAE497 ABIE40_RS11455 RNA polymerase sigma factor insig. 37 85
  Agrobacterium fabrum C58 Atu5490 ECF family RNA polymerase sigma factor insig. 37 85
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 37 84
  Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 41 85
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 34 84
  Sphingobium sp. HT1-2 GFF1466 RNA polymerase sigma-54 factor RpoN insig. 38 83
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 34 83
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 35 84
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 44 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07010 RNA polymerase sigma factor no data 36 94
  Ralstonia solanacearum UW163 UW163_RS06605 RNA polymerase sigma factor no data 36 94
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 33 86
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 41 83
  Cupriavidus basilensis FW507-4G11 RR42_RS19070 DNA-directed RNA polymerase sigma-70 factor insig. 39 94
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 38 82
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 38 82
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 34 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01554 RNA polymerase sigma-70 factor, ECF subfamily insig. 37 84
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 35 87
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 36 91
  Rahnella sp. WP5 EX31_RS05375 sigma-70 family RNA polymerase sigma factor insig. 35 90
  Enterobacter sp. TBS_079 MPMX20_03520 ECF RNA polymerase sigma factor EcfG insig. 38 77
  Pantoea sp. MT58 IAI47_21640 sigma-70 family RNA polymerase sigma factor insig. 38 77
  Bifidobacterium breve UCC2003 BBR_RS16820 RNA polymerase sigma factor RpoE strong 34 83