| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1118 | | transcriptional regulator, RpiR family | insig. | 100 | 100 |
| o | Enterobacter sp. TBS_079 | MPMX20_02354 | | hypothetical protein | insig. | 93 | 100 |
| o | Serratia liquefaciens MT49 | IAI46_12015 | | MurR/RpiR family transcriptional regulator | insig. | 61 | 100 |
| o | Rahnella sp. WP5 | EX31_RS10250 | | MurR/RpiR family transcriptional regulator | insig. | 58 | 100 |
| o | Paraburkholderia graminis OAS925 | ABIE53_004340 | | DNA-binding MurR/RpiR family transcriptional regulator | insig. | 56 | 96 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS24260 | | RpiR family transcriptional regulator | insig. | 55 | 96 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06098 | | transcriptional regulator, RpiR family | insig. | 54 | 96 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS15565 | | MurR/RpiR family transcriptional regulator | strong | 54 | 96 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02401 | | hypothetical protein | cofit | 54 | 99 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12065 | | MurR/RpiR family transcriptional regulator | strong | 38 | 96 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS11800 | | MurR/RpiR family transcriptional regulator | cofit | 37 | 98 |
| o | Pseudomonas sp. SVBP6 | COO64_RS14535 | | MurR/RpiR family transcriptional regulator | insig. | 34 | 95 |
| o | Pseudomonas putida KT2440 | PP_3592 | | Transcriptional regulator, RpiR family | strong | 31 | 95 |
| o | Pseudomonas sp. BP01 | JOY50_RS07380 | | MurR/RpiR family transcriptional regulator | insig. | 30 | 95 |
| o | Pseudomonas segetis P6 | ACVTMO_RS19695 | | MurR/RpiR family transcriptional regulator | cofit | 28 | 93 |
| | Rahnella sp. WP5 | EX31_RS07425 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 97 |
| | Pantoea sp. MT58 | IAI47_03370 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 100 |
| o | Rhizobium sp. OAE497 | ABIE40_RS16980 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 86 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c27130 | | putative HTH-type transcriptional regulator | strong | 23 | 94 |
| o | Agrobacterium fabrum C58 | Atu2145 | | transcriptional regulator, RpiR family | sig. | 27 | 90 |
| o | Sinorhizobium meliloti 1021 | SMc01602 | | hypothetical protein | insig. | 25 | 88 |
| | Sinorhizobium meliloti 1021 | SMc02353 | | hypothetical protein | insig. | 24 | 92 |
| | Agrobacterium fabrum C58 | Atu4454 | | RpiR family transcriptional regulator | insig. | 24 | 91 |
| | Rhizobium sp. OAE497 | ABIE40_RS12055 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 90 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_25880 | | transcriptional repressor QapR | strong | 25 | 96 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25830 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 24 | 96 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS58260 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 24 | 96 |
| | Enterobacter sp. TBS_079 | MPMX20_01667 | | hypothetical protein | sig. | 22 | 97 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS05080 | | MurR/RpiR family transcriptional regulator | sig. | 24 | 98 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_22280 | | MurR/RpiR family transcriptional regulator HpxU | insig. | 23 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS20155 | | MurR/RpiR family transcriptional regulator | cofit | 23 | 89 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS13890 | | RpiR family transcriptional regulator | strong | 22 | 98 |
| | Dickeya dianthicola 67-19 | HGI48_RS16735 | | SIS domain-containing protein | cofit | 23 | 89 |
| | Dickeya dianthicola ME23 | DZA65_RS17825 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 89 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04463 | | transcriptional regulator, RpiR family | strong | 24 | 98 |
| | Paraburkholderia graminis OAS925 | ABIE53_002944 | | DNA-binding MurR/RpiR family transcriptional regulator | strong | 24 | 98 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12105 | | RpiR family transcriptional regulator | strong | 21 | 87 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS09880 | | MurR/RpiR family transcriptional regulator HpxU | cofit | 22 | 96 |
| | Dickeya dadantii 3937 | DDA3937_RS16665 | | MurR/RpiR family transcriptional regulator | sig. | 26 | 59 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS26180 | | hypothetical protein | insig. | 25 | 85 |
| | Klebsiella michiganensis M5al | BWI76_RS10565 | | sugar isomerase | sig. | 23 | 97 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1939 | | transcriptional regulator, RpiR family | insig. | 23 | 97 |
| | Pantoea sp. MT58 | IAI47_15275 | | MurR/RpiR family transcriptional regulator HpxU | insig. | 21 | 96 |
| | Alteromonas macleodii MIT1002 | MIT1002_01597 | | putative DNA-binding transcriptional regulator | cofit | 26 | 90 |
| | Rahnella sp. WP5 | EX31_RS21125 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 73 |
| | Serratia liquefaciens MT49 | IAI46_04245 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 54 |
| | Fusobacterium nucleatum SB010 | HUW76_09985 | | MurR/RpiR family transcriptional regulator | cofit | 21 | 57 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0959 | | transcriptional regulator, RpiR family (RefSeq) | insig. | 23 | 77 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5851 | | Transcriptional regulator, RpiR family | insig. | 23 | 82 |
| | Pseudomonas sp. DMC3 | GFF992 | | hypothetical protein | cofit | 23 | 80 |
| | Pseudomonas sp. DMC3 | GFF1723 | | HTH-type transcriptional regulator MurR | cofit | 20 | 88 |
| | Enterobacter sp. TBS_079 | MPMX20_02758 | | HTH-type transcriptional regulator HexR | strong | 23 | 82 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | insig. | 23 | 82 |
| | Rhizobium sp. OAE497 | ABIE40_RS21085 | | MurR/RpiR family transcriptional regulator | strong | 25 | 93 |
| | Klebsiella michiganensis M5al | BWI76_RS18110 | | transcriptional regulator HexR | sig. | 22 | 82 |
| | Pseudomonas sp. RS175 | PFR28_02426 | | HTH-type transcriptional regulator MurR | strong | 20 | 88 |
| | Erwinia amylovora T8 | OLJFJH_18555 | | MurR/RpiR family transcriptional regulator HpxU | insig. | 25 | 49 |
| | Pseudomonas sp. RS175 | PFR28_01273 | | hypothetical protein | cofit | 25 | 82 |
| | Pectobacterium carotovorum WPP14 | HER17_RS04535 | | MurR/RpiR family transcriptional regulator | insig. | 21 | 90 |
| | Sinorhizobium meliloti 1021 | SMc04363 | | hypothetical protein | insig. | 32 | 26 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2175 | | Transcriptional regulator, RpiR family | strong | 23 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | sig. | 20 | 88 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | insig. | 20 | 88 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_01500 | | RpiR family transcriptional regulator | strong | 23 | 80 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4273 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | sig. | 20 | 88 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23155 | | RpiR family transcriptional regulator | strong | 20 | 88 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_510 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | strong | 20 | 88 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_25375 | | transcriptional regulator HexR | insig. | 22 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_05393 | | hypothetical protein | insig. | 22 | 98 |
| | Variovorax sp. SCN45 | GFF2285 | | Transcriptional regulator, RpiR family | insig. | 26 | 88 |
| | Bifidobacterium breve UCC2003 | BBR_RS13225 | | MurR/RpiR family transcriptional regulator | sig. | 23 | 56 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02650 | | HTH-type transcriptional regulator MurR | cofit | 20 | 88 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21330 | | RpiR family transcriptional regulator | sig. | 19 | 88 |
| | Phaeobacter inhibens DSM 17395 | PGA1_262p02290 | | sugar isomerase-like protein | sig. | 21 | 98 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS12580 | | MurR/RpiR family transcriptional regulator | strong | 20 | 88 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS12580 | | MurR/RpiR family transcriptional regulator | strong | 20 | 88 |
| | Pseudomonas orientalis W4I3 | QF045_RS14570 | | MurR/RpiR family transcriptional regulator | cofit | 20 | 88 |
| | Pseudomonas simiae WCS417 | PS417_11845 | | RpiR family transcriptional regulator | strong | 20 | 88 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS26890 | | RpiR family transcriptional regulator | insig. | 26 | 89 |
| | Sinorhizobium meliloti 1021 | SM_b20276 | | transcriptional regulator | insig. | 18 | 87 |
| | Pantoea sp. MT58 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 81 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_27890 | | RpiR family transcriptional regulator | strong | 23 | 85 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS02370 | | transcriptional regulator HexR | cofit | 24 | 81 |
| | Pseudomonas sp. SVBP6 | COO64_RS08420 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 74 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2055 | | Probable transcriptional regulator | strong | 37 | 24 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1632 | | Phosphogluconate repressor HexR, RpiR family | insig. | 21 | 82 |
| | Serratia liquefaciens MT49 | IAI46_02300 | | MurR/RpiR family transcriptional regulator | insig. | 21 | 77 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS07300 | | MurR/RpiR family transcriptional regulator | insig. | 33 | 24 |
| | Bosea sp. OAE506 | ABIE41_RS16720 | | MurR/RpiR family transcriptional regulator | insig. | 31 | 27 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS16875 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 54 |
| | Ralstonia solanacearum GMI1000 | RS_RS24600 | | MurR/RpiR family transcriptional regulator | insig. | 31 | 27 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS22020 | | MurR/RpiR family transcriptional regulator | insig. | 21 | 49 |