Homologs of ECD_02486 from Escherichia coli BL21

cold shock protein associated with 30S ribosomal subunit
SEED: Ribosome hibernation protein YfiA
KEGG: ribosome-associated inhibitor A

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 100 100
o Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 100 100
o Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA insig. 100 100
o Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA insig. 100 100
o Escherichia coli ECRC100 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA insig. 100 100
o Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 100 100
o Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA cofit 100 100
o Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 100 100
o Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA sig. 100 100
o Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 100 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 100 100
o Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 100 100
o Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 100 100
o Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 93 100
o Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 93 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 92 99
o Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 92 98
o Klebsiella pneumoniae MKP103 KDGMDA_02150 ribosome-associated translation inhibitor RaiA sig. 91 98
o Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 79 99
o Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 79 99
o Erwinia amylovora T8 OLJFJH_09715 ribosome-associated translation inhibitor RaiA insig. 82 99
o Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 82 94
o Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA strong 81 100
o Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 80 99
o Erwinia tracheiphila SCR3 LU632_RS16955 raiA ribosome-associated translation inhibitor RaiA insig. 81 96
o Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA sig. 83 91
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16550 ribosome-associated translation inhibitor RaiA cofit 83 91
o Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 75 100
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_26880 hypothetical protein insig. 84 80
o Vibrio cholerae E7946 ATCC 55056 CSW01_03685 ribosomal subunit interface protein insig. 54 86
o Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 46 98
o Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 46 86
o Shewanella amazonensis SB2B Sama_0899 ribosomal subunit interface protein (RefSeq) sig. 45 98
  Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 46 83
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 43 85
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09355 ribosome hibernation promoting factor cofit 43 85
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 43 77
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 44 77
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 44 77
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 43 77
  Pseudomonas aeruginosa MRSN321 DY961_RS24160 raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome-associated translation inhibitor RaiA strong 35 90
  Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein strong 35 90
  Pseudomonas aeruginosa PUPa3 DQ20_RS56620 raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome-associated translation inhibitor RaiA strong 35 90
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 41 85
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 41 85
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 38 81
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13735 hpf ribosome hibernation promoting factor insig. 41 85
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 38 85
  Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 41 85
  Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 37 81
  Klebsiella pneumoniae MKP103 KDGMDA_06085 ribosome hibernation promoting factor insig. 40 77
  Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 41 77
  Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 41 77
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor cofit 41 77
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 40 77
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 40 77
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 40 77
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 40 77
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 40 77
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 40 77
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 40 77
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 40 77
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 40 77
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 40 77
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 40 77
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 40 77
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 40 77
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 39 77
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 37 84
  Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 36 83
  Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 37 77
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 37 77
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 34 85
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 37 83
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 37 77
  Pseudomonas segetis P6 ACVTMO_RS19125 hpf ribosome hibernation-promoting factor, HPF/YfiA family strong 34 81
  Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 37 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 37 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01074 Ribosome hibernation promoting factor cofit 37 81
  Pseudomonas orientalis W4I3 QF045_RS07330 ribosome-associated translation inhibitor RaiA no data 37 81
  Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 32 90
  Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 35 83
  Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 34 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 34 83
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 34 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 34 83
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 34 83
  Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 34 77
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 39 77
  Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 34 77
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 32 83
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 37 81
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 37 81
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 31 82
  Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 32 83
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 31 82
  Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 34 83
  Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 33 77
  Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 33 81
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 33 81