Homologs of Sama_0899 from Shewanella amazonensis SB2B

ribosomal subunit interface protein (RefSeq)
SEED: Ribosome hibernation protein YfiA
KEGG: ribosome-associated inhibitor A

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella amazonensis SB2B Sama_0899 ribosomal subunit interface protein (RefSeq) sig. 100 100
o Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 75 100
o Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 83 81
o Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 67 100
o Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 47 82
o Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 45 97
o Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 45 97
o Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 45 97
o Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 45 97
o Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 45 97
o Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA insig. 45 97
o Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA insig. 45 97
o Escherichia coli ECRC100 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA insig. 45 97
o Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 45 97
o Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA cofit 45 97
o Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 45 97
o Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA sig. 45 97
o Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 45 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 45 97
o Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 45 97
o Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 45 97
o Erwinia amylovora T8 OLJFJH_09715 ribosome-associated translation inhibitor RaiA insig. 46 89
o Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 42 96
o Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 42 96
o Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 48 82
o Klebsiella pneumoniae MKP103 KDGMDA_02150 ribosome-associated translation inhibitor RaiA sig. 48 82
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 47 88
o Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA insig. 47 81
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16550 ribosome-associated translation inhibitor RaiA cofit 47 81
o Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 47 81
o Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA insig. 47 81
o Erwinia tracheiphila SCR3 LU632_RS16955 raiA ribosome-associated translation inhibitor RaiA insig. 46 81
o Vibrio cholerae E7946 ATCC 55056 CSW01_03685 ribosomal subunit interface protein insig. 45 87
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_26880 hypothetical protein insig. 40 92
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 40 72
  Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 42 70
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 42 70
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01074 Ribosome hibernation promoting factor no data 42 70
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 38 72
  Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 37 86
  Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 36 70
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 35 72
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 35 72
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 35 72
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 34 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 36 72
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 34 82
  Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 33 78
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 38 80
  Pseudomonas segetis P6 MPMX49_03859 Ribosome hibernation promoting factor strong 35 75
  Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 34 86
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 38 75
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 38 75
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 35 72
  Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 33 86
  Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 33 85
  Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 35 70
  Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 33 70
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 35 70
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 32 80
  Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein strong 35 75
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 34 80
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 36 75
  Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 35 70
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13735 hpf ribosome hibernation promoting factor insig. 34 80
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 33 80
  Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 31 70
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 33 80
  Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 33 80
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09355 ribosome hibernation promoting factor cofit 33 80
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 31 70
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 33 80
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 32 80
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 32 80
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 32 80
  Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 33 80
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 32 80
  Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 33 72
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 31 80
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 31 80
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 31 80
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 31 80
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 31 80
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 31 80
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 31 80
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 31 80
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 31 80
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 31 80
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 31 80
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 31 80
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 31 80
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 32 80
  Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 30 75
  Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 29 85
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 31 70
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 31 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 29 85
  Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 29 85
  Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 29 85
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 29 72