| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVUA0097 | | radical SAM domain protein (TIGR) | insig. | 100 | 100 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_1873 | | Radical SAM domain protein (RefSeq) | insig. | 44 | 93 |
| | Xanthobacter sp. DMC5 | GFF1197 | | PqqA peptide cyclase | insig. | 26 | 54 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2991 | | Radical SAM domain protein (RefSeq) | insig. | 37 | 26 |
| | Azospirillum sp. SherDot2 | MPMX19_06590 | | PqqA peptide cyclase | insig. | 31 | 42 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_17110 | | radical SAM protein | strong | 27 | 41 |
| | Erwinia amylovora T8 | OLJFJH_02120 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 32 | 40 |
| | Azospirillum brasilense Sp245 | AZOBR_RS26065 | | hypothetical protein | insig. | 30 | 28 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_697 | | Heme d1 biosynthesis protein NirJ | insig. | 26 | 51 |
| | Sphingobium sp. HT1-2 | GFF3612 | | 'GTP 3',8-cyclase (EC 4.1.99.22)' transl_table=11 | cofit | 30 | 40 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0956 | | Predicted Fe-S oxidoreductases | insig. | 29 | 39 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5730 | | Molybdenum cofactor biosynthesis protein MoaA | no data | 28 | 44 |
| | Azospirillum brasilense Sp245 | AZOBR_RS12540 | | molybdenum cofactor biosynthesis protein MoeA | strong | 27 | 42 |
| | Rahnella sp. WP5 | EX31_RS00655 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 40 |
| | Azospirillum sp. SherDot2 | MPMX19_06624 | | PqqA peptide cyclase | cofit | 30 | 24 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03458 | | PqqA peptide cyclase | cofit | 25 | 51 |
| | Azospirillum sp. SherDot2 | MPMX19_00538 | | GTP 3',8-cyclase | insig. | 26 | 45 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11590 | | radical SAM protein | cofit | 30 | 33 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS10370 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | cofit | 27 | 49 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5772 | | Heme d1 biosynthesis protein NirJ | strong | 24 | 51 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3173 | | Radical SAM domain protein (RefSeq) | insig. | 25 | 40 |
| | Methanococcus maripaludis JJ | MMJJ_RS02055 | | GTP 3',8-cyclase MoaA | strong | 33 | 22 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03419 | | 'GTP 3',8-cyclase' transl_table=11 | insig. | 27 | 48 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25035 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 25 | 51 |
| | Pseudomonas sp. RS175 | PFR28_02238 | | Putative mycofactocin radical SAM maturase MftC | insig. | 27 | 52 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2901 | | Radical SAM domain protein (RefSeq) | no data | 25 | 47 |
| | Methanococcus maripaludis S2 | MMP_RS03015 | | GTP 3' 8-cyclase MoaA | strong | 32 | 22 |
| | Azospirillum sp. SherDot2 | MPMX19_06583 | | GTP 3',8-cyclase | cofit | 33 | 23 |
| | Pantoea sp. MT58 | IAI47_10205 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 49 |
| | Pseudomonas aeruginosa MRSN321 | PFGADD_00520 | nirJ | heme d1 biosynthesis radical SAM protein NirJ | insig. | 24 | 58 |
| | Pseudomonas sp. SVBP6 | COO64_RS14255 | moaA | GTP 3',8-cyclase MoaA | insig. | 27 | 44 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3004 | | radical SAM domain protein (TIGR) | cofit | 26 | 45 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_22880 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 24 | 58 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_00523 | nirJ | heme d1 biosynthesis radical SAM protein NirJ | insig. | 24 | 58 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS00365 | | radical SAM protein | no data | 29 | 23 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS07120 | | heme d1 biosynthesis radical SAM protein NirJ | cofit | 25 | 42 |
| | Klebsiella pneumoniae MRSN742743 | GJGHJB_02370 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 49 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0855 | | radical SAM domain protein (TIGR) | no data | 24 | 47 |
| | Lysobacter sp. OAE881 | ABIE51_RS14055 | | GTP 3',8-cyclase MoaA | strong | 32 | 26 |
| | Acinetobacter baumannii LAC-4 | RR41_RS07905 | | GTP 3',8-cyclase MoaA | insig. | 31 | 23 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_22545 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 49 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22120 | | cyclic pyranopterin phosphate synthase MoaA | insig. | 27 | 46 |
| | Pseudomonas sp. RS175 | PFR28_01637 | | 'GTP 3',8-cyclase' transl_table=11 | insig. | 28 | 45 |
| | Pseudomonas sp. DMC3 | GFF62 | | PqqA peptide cyclase | cofit | 28 | 43 |
| | Pseudomonas sp. SVBP6 | COO64_RS22660 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 43 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25230 | | cyclic pyranopterin phosphate synthase MoaA | insig. | 27 | 45 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3003 | | radical SAM domain protein (TIGR) | sig. | 30 | 29 |
| | Rhodopseudomonas palustris CGA009 | TX73_013640 | | radical SAM protein | strong | 23 | 41 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1554 | | radical SAM domain protein (TIGR) | insig. | 36 | 21 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_734 | | Molybdenum cofactor biosynthesis protein MoaA | sig. | 27 | 45 |
| | Pseudomonas aeruginosa MRSN321 | PFGADD_03133 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 27 | 48 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_09720 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 48 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_03167 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 27 | 48 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21930 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 23 | 51 |
| | Mycobacterium tuberculosis H37Rv | Rv3109 | | Probable molybdenum cofactor biosynthesis protein A MoaA1 | insig. | 28 | 23 |
| | Ralstonia solanacearum GMI1000 | RS_RS08730 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 31 | 23 |
| | Pseudomonas orientalis W4I3 | QF045_RS00340 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 41 |
| | Pseudomonas protegens RBAN4 | FABNJH_28590 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 42 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_07450 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 43 |
| | Pseudomonas simiae WCS417 | PS417_25940 | | pyrroloquinoline quinone biosynthesis protein PqqE | strong | 27 | 41 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0182 | | radical SAM domain protein (TIGR) | insig. | 26 | 24 |
| | Xanthobacter sp. DMC5 | GFF3708 | | PqqA peptide cyclase | strong | 27 | 51 |
| | Pseudomonas sp. RS175 | PFR28_04090 | | PqqA peptide cyclase | cofit | 27 | 44 |
| | Pseudomonas sp. BP01 | JOY50_RS17995 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 43 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04338 | | cyclic pyranopterin monophosphate synthase subunit MoaA | strong | 29 | 22 |
| | Paraburkholderia graminis OAS925 | ABIE53_003060 | | cyclic pyranopterin phosphate synthase | strong | 29 | 22 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4674 | | Radical SAM | insig. | 27 | 41 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4674 | | Radical SAM | insig. | 27 | 41 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1165 | | Coenzyme PQQ synthesis protein E | insig. | 27 | 41 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22410 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 48 |
| | Rahnella sp. WP5 | EX31_RS15400 | | nitrogenase cofactor biosynthesis protein NifB | insig. | 28 | 23 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4772 | | Coenzyme PQQ synthesis protein E | strong | 27 | 41 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3620 | | molybdenum cofactor biosynthesis protein A, bacterial | insig. | 25 | 39 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_14200 | | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 27 | 41 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1947 | | Coenzyme PQQ synthesis protein E | insig. | 27 | 41 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05309 | | PqqA peptide cyclase | cofit | 27 | 41 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_30425 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 41 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS27585 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 41 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS27585 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 41 |
| | Pseudomonas simiae WCS417 | PS417_15695 | | molybdenum cofactor biosynthesis protein A | strong | 25 | 43 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2499 | | Coenzyme PQQ synthesis protein E | cofit | 27 | 42 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS16210 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 30 | 23 |
| | Rhodospirillum rubrum S1H | Rru_A0761 | | Radical SAM (NCBI) | insig. | 28 | 27 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS14490 | | molybdenum cofactor biosynthesis protein MoeA | strong | 28 | 22 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS00105 | | radical SAM protein | cofit | 27 | 30 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0454 | | coenzyme PQQ biosynthesis protein E (RefSeq) | insig. | 28 | 48 |
| | Pseudomonas segetis P6 | ACVTMO_RS08120 | moaA | GTP 3',8-cyclase MoaA | insig. | 31 | 22 |