Conservation of cofitness between Xcc-8004.842.1 and Xcc-8004.5407.1 in Xanthomonas campestris pv. campestris strain 8004

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.842.1 Protease II (EC 3.4.21.83) 1.0 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.44 5
Lysobacter sp. OAE881 0.77 ABIE51_RS03010 S9 family peptidase 0.64 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.79 21
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_3776 Protease II 0.21 Ga0059261_2204 tRNA modification GTPase trmE low > 68
Pontibacter actiniarum KMM 6156, DSM 19842 0.51 CA264_12915 oligopeptidase B 0.30 CA264_06625 tRNA modification GTPase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2305 Protease II 0.28 Echvi_3509 tRNA modification GTPase TrmE — —
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2324 Protease II 0.44 B158DRAFT_0373 tRNA modification GTPase TrmE low > 40
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS20860 oligopeptidase B 0.28 CA265_RS10450 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Rahnella sp. WP5 0.46 EX31_RS24750 prolyl oligopeptidase family serine peptidase 0.43 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Shewanella sp. ANA-3 0.45 Shewana3_0135 oligopeptidase B (RefSeq) 0.42 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) low > 73
Serratia liquefaciens MT49 0.45 IAI46_09975 prolyl oligopeptidase family serine peptidase 0.44 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Alteromonas macleodii MIT1002 0.45 MIT1002_02578 Protease 2 0.42 MIT1002_04128 tRNA modification GTPase MnmE — —
Shewanella oneidensis MR-1 0.44 SO0144 ptrB protease II (NCBI ptt file) 0.41 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.44 Sama_0144 oligopeptidase B (RefSeq) 0.41 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) — —
Shewanella loihica PV-4 0.43 Shew_0039 oligopeptidase B (RefSeq) 0.41 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) — —
Escherichia coli ECRC101 0.43 MCAODC_19025 ptrB oligopeptidase B 0.43 MCAODC_05495 tRNA modification GTPase MnmE — —
Escherichia coli ECRC99 0.43 KEDOAH_01725 ptrB oligopeptidase B 0.43 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli ECRC98 0.43 JDDGAC_00955 ptrB oligopeptidase B 0.43 JDDGAC_18605 tRNA modification GTPase MnmE — —
Escherichia coli ECRC100 0.43 OKFHMN_26380 ptrB oligopeptidase B 0.43 OKFHMN_14985 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 0.43 NIAGMN_01680 ptrB oligopeptidase B 0.43 NIAGMN_12740 tRNA modification GTPase MnmE — —
Escherichia coli ECOR38 0.42 HEPCGN_04780 ptrB oligopeptidase B 0.42 HEPCGN_13680 tRNA modification GTPase MnmE low > 87
Dickeya dianthicola 67-19 0.42 HGI48_RS10180 prolyl oligopeptidase family serine peptidase 0.43 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 71
Escherichia coli ECRC62 0.42 BNILDI_15685 ptrB oligopeptidase B 0.42 BNILDI_04405 tRNA modification GTPase MnmE low > 75
Dickeya dadantii 3937 0.42 DDA3937_RS10150 prolyl oligopeptidase family serine peptidase 0.43 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Escherichia coli ECOR27 0.42 NOLOHH_16890 ptrB oligopeptidase B 0.43 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Escherichia fergusonii Becca 0.42 EFB2_02099 Protease 2 0.43 EFB2_04925 tRNA modification GTPase MnmE low > 86
Pectobacterium carotovorum WPP14 0.42 HER17_RS11765 prolyl oligopeptidase family serine peptidase 0.43 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_01886 Protease 2 0.43 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia coli BL21 0.42 ECD_01816 protease II 0.43 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 61
Dickeya dianthicola ME23 0.42 DZA65_RS10595 prolyl oligopeptidase family serine peptidase 0.44 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Pantoea sp. MT58 0.42 IAI47_08515 prolyl oligopeptidase family serine peptidase 0.42 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Escherichia coli BW25113 0.42 b1845 ptrB protease II (NCBI) 0.42 b3706 trmE tRNA modification GTPase (NCBI) low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_02752 Protease 2 0.43 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0709 Protease II 0.42 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Klebsiella michiganensis M5al 0.41 BWI76_RS18075 oligopeptidase B 0.43 BWI76_RS00050 tRNA modification GTPase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF1624 Protease II (EC 3.4.21.83) 0.42 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Bosea sp. OAE506 0.37 ABIE41_RS22470 S9 family peptidase 0.27 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 77
Caulobacter crescentus NA1000 0.37 CCNA_00985 protease II PtrB 0.31 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00985 protease II PtrB 0.31 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase low > 67
Rhizobium sp. OAE497 0.36 ABIE40_RS04845 S9 family peptidase 0.30 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS06115 S9 family peptidase 0.28 A4249_RS13700 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 48
Sinorhizobium meliloti 1021 0.36 SMc00114 protease II oligopeptidase B hydrolase serine protease 0.28 SMc02797 tRNA modification GTPase TrmE — —
Agrobacterium fabrum C58 0.36 Atu0897 protease II 0.29 Atu2832 tRNA modification GTPase low > 89
Pseudomonas putida KT2440 0.35 PP_4583 putative Peptidase 0.44 PP_0005 GTPase — —
Rhodopseudomonas palustris CGA009 0.34 TX73_008065 S9 family peptidase 0.27 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Pseudomonas sp. RS175 0.34 PFR28_00723 Dipeptidyl aminopeptidase BI 0.43 PFR28_04588 tRNA modification GTPase MnmE — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.44 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.44 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_2713 Protease II (EC 3.4.21.83) 0.43 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_04360 peptidase S9 0.43 AO356_11660 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3357 Protease II (EC 3.4.21.83) 0.44 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_4484 Protease II (EC 3.4.21.83) 0.43 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas stutzeri RCH2 0.32 Psest_2655 Protease II 0.47 Psest_4373 tRNA modification GTPase TrmE — —
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_17950 peptidase S9 0.43 AO353_10455 tRNA modification GTPase MnmE low > 101
Pseudomonas simiae WCS417 0.32 PS417_07445 peptidase S9 0.44 PS417_28540 tRNA modification GTPase MnmE — —
Pseudomonas sp. S08-1 0.32 OH686_05270 Protease II 0.46 OH686_12655 tRNA modification GTPase TrmE — —
Pseudomonas fluorescens SBW25 0.31 PFLU_RS07530 S9 family peptidase 0.44 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.60 25
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS07530 S9 family peptidase 0.44 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Vibrio cholerae E7946 ATCC 55056 0.19 CSW01_14340 S9 family peptidase 0.45 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 62
Bacteroides ovatus ATCC 8483 0.16 BACOVA_00701 peptidase, S9A/B/C family, catalytic domain protein 0.26 BACOVA_05338 tRNA modification GTPase TrmE low > 94
Dyella japonica UNC79MFTsu3.2 0.14 ABZR86_RS17900 prolyl oligopeptidase family serine peptidase 0.46 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Rhodanobacter sp. FW510-T8 0.11 OKGIIK_14405 Peptidase S9 0.47 OKGIIK_15285 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 52
Rhodanobacter denitrificans FW104-10B01 0.11 LRK54_RS07925 prolyl oligopeptidase family serine peptidase 0.46 LRK54_RS08505 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 59
Rhodanobacter denitrificans MT42 0.11 LRK55_RS07655 prolyl oligopeptidase family serine peptidase 0.46 LRK55_RS08270 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 63

Not shown: 0 genomes with orthologs for Xcc-8004.842.1 only; 37 genomes with orthologs for Xcc-8004.5407.1 only