Conservation of cofitness between Xcc-8004.842.1 and Xcc-8004.488.1 in Xanthomonas campestris pv. campestris strain 8004

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.842.1 Protease II (EC 3.4.21.83) 1.0 Xcc-8004.488.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.41 16
Lysobacter sp. OAE881 0.77 ABIE51_RS03010 S9 family peptidase 0.82 ABIE51_RS01205 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 62
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_3776 Protease II 0.40 Ga0059261_2205 glucose-inhibited division protein A low > 68
Pontibacter actiniarum KMM 6156, DSM 19842 0.51 CA264_12915 oligopeptidase B 0.40 CA264_17285 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2305 Protease II 0.44 Echvi_1059 glucose-inhibited division protein A — —
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2324 Protease II 0.68 B158DRAFT_0377 glucose-inhibited division protein A low > 40
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS20860 oligopeptidase B 0.41 CA265_RS21200 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Rahnella sp. WP5 0.46 EX31_RS24750 prolyl oligopeptidase family serine peptidase 0.65 EX31_RS06140 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 89
Shewanella sp. ANA-3 0.45 Shewana3_0135 oligopeptidase B (RefSeq) 0.67 Shewana3_0002 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) low > 73
Serratia liquefaciens MT49 0.45 IAI46_09975 prolyl oligopeptidase family serine peptidase 0.64 IAI46_25110 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Alteromonas macleodii MIT1002 0.45 MIT1002_02578 Protease 2 0.66 MIT1002_04124 Glucose-inhibited division protein A low > 70
Shewanella oneidensis MR-1 0.44 SO0144 ptrB protease II (NCBI ptt file) 0.67 SO4758 gidA glucose-inhibited division protein A (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.44 Sama_0144 oligopeptidase B (RefSeq) 0.67 Sama_3655 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) — —
Shewanella loihica PV-4 0.43 Shew_0039 oligopeptidase B (RefSeq) 0.68 Shew_3856 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) — —
Escherichia coli ECRC98 0.43 JDDGAC_00955 ptrB oligopeptidase B 0.64 JDDGAC_18405 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Escherichia coli ECRC99 0.43 KEDOAH_01725 ptrB oligopeptidase B 0.64 KEDOAH_13365 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC102 0.43 NIAGMN_01680 ptrB oligopeptidase B 0.64 NIAGMN_12540 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC100 0.43 OKFHMN_26380 ptrB oligopeptidase B 0.64 OKFHMN_14785 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 80
Escherichia coli ECRC101 0.43 MCAODC_19025 ptrB oligopeptidase B 0.64 MCAODC_05290 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECOR38 0.42 HEPCGN_04780 ptrB oligopeptidase B 0.64 HEPCGN_13500 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 87
Dickeya dianthicola 67-19 0.42 HGI48_RS10180 prolyl oligopeptidase family serine peptidase 0.64 HGI48_RS21380 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 71
Escherichia coli ECRC62 0.42 BNILDI_15685 ptrB oligopeptidase B 0.64 BNILDI_04605 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Escherichia fergusonii Becca 0.42 EFB2_02099 Protease 2 0.64 EFB2_04892 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG low > 86
Escherichia coli ECOR27 0.42 NOLOHH_16890 ptrB oligopeptidase B 0.64 NOLOHH_06920 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Dickeya dadantii 3937 0.42 DDA3937_RS10150 prolyl oligopeptidase family serine peptidase 0.64 DDA3937_RS21605 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_01886 Protease 2 0.64 OHPLBJKB_04312 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Pectobacterium carotovorum WPP14 0.42 HER17_RS11765 prolyl oligopeptidase family serine peptidase 0.65 HER17_RS21600 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Escherichia coli BL21 0.42 ECD_01816 protease II 0.64 ECD_03625 5-methylaminomethyl-2-thiouridine modification at tRNA U34 low > 61
Dickeya dianthicola ME23 0.42 DZA65_RS10595 prolyl oligopeptidase family serine peptidase 0.64 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Pantoea sp. MT58 0.42 IAI47_08515 prolyl oligopeptidase family serine peptidase 0.65 IAI47_00300 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 76
Escherichia coli BW25113 0.42 b1845 ptrB protease II (NCBI) 0.64 b3741 gidA glucose-inhibited division protein A (NCBI) low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_02752 Protease 2 0.65 MPMX20_04626 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG low > 85
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0709 Protease II 0.65 EX28DRAFT_4017 glucose-inhibited division protein A — —
Klebsiella michiganensis M5al 0.41 BWI76_RS18075 oligopeptidase B 0.65 BWI76_RS00230 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF1624 Protease II (EC 3.4.21.83) 0.65 GFF1716 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 78
Bosea sp. OAE506 0.37 ABIE41_RS22470 S9 family peptidase 0.43 ABIE41_RS04685 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00985 protease II PtrB 0.45 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 67
Caulobacter crescentus NA1000 0.37 CCNA_00985 protease II PtrB 0.45 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS06115 S9 family peptidase 0.44 A4249_RS13705 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 48
Sinorhizobium meliloti 1021 0.36 SMc00114 protease II oligopeptidase B hydrolase serine protease 0.46 SMc02798 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA — —
Agrobacterium fabrum C58 0.36 Atu0897 protease II 0.43 Atu2831 glucose inhibited division protein A low > 89
Pseudomonas putida KT2440 0.35 PP_4583 putative Peptidase 0.67 PP_0004 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Rhodopseudomonas palustris CGA009 0.34 TX73_008065 S9 family peptidase 0.43 TX73_001530 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Pseudomonas sp. RS175 0.34 PFR28_00723 Dipeptidyl aminopeptidase BI 0.67 PFR28_04587 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.67 Psyr_5132 Glucose-inhibited division protein A subfamily low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.67 Psyr_5132 Glucose-inhibited division protein A subfamily low > 86
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_2713 Protease II (EC 3.4.21.83) 0.67 Pf6N2E2_4203 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_04360 peptidase S9 0.67 AO356_11665 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3357 Protease II (EC 3.4.21.83) 0.67 Pf1N1B4_1934 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_4484 Protease II (EC 3.4.21.83) 0.67 PfGW456L13_671 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas stutzeri RCH2 0.32 Psest_2655 Protease II 0.66 Psest_4365 glucose-inhibited division protein A — —
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_17950 peptidase S9 0.67 AO353_10445 tRNA uridine 5-carboxymethylaminomethyl modification protein low > 101
Pseudomonas simiae WCS417 0.32 PS417_07445 peptidase S9 0.67 PS417_28520 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Pseudomonas sp. S08-1 0.32 OH686_05270 Protease II 0.66 OH686_12660 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS07530 S9 family peptidase 0.67 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Pseudomonas fluorescens SBW25 0.31 PFLU_RS07530 S9 family peptidase 0.67 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Vibrio cholerae E7946 ATCC 55056 0.19 CSW01_14340 S9 family peptidase 0.66 CSW01_14055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 62
Bacteroides ovatus ATCC 8483 0.16 BACOVA_00701 peptidase, S9A/B/C family, catalytic domain protein 0.41 BACOVA_01367 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 94
Dyella japonica UNC79MFTsu3.2 0.14 ABZR86_RS17900 prolyl oligopeptidase family serine peptidase 0.71 ABZR86_RS15760 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 74
Rhodanobacter sp. FW510-T8 0.11 OKGIIK_14405 Peptidase S9 0.69 OKGIIK_13725 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 52
Rhodanobacter denitrificans FW104-10B01 0.11 LRK54_RS07925 prolyl oligopeptidase family serine peptidase 0.70 LRK54_RS10190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.44 21
Rhodanobacter denitrificans MT42 0.11 LRK55_RS07655 prolyl oligopeptidase family serine peptidase 0.71 LRK55_RS09830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 63

Not shown: 1 genomes with orthologs for Xcc-8004.842.1 only; 37 genomes with orthologs for Xcc-8004.488.1 only