Conservation of cofitness between TX73_004070 and TX73_010535 in Rhodopseudomonas palustris CGA009

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_004070 aminotransferase class V-fold PLP-dependent enzyme 1.0 TX73_010535 biotin synthase BioB 0.53 7
Phaeobacter inhibens DSM 17395 0.39 PGA1_c23940 putative serine-glyoxylate aminotransferase 0.64 PGA1_c09120 biotin synthase BioB low > 62
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS17005 aminotransferase class V-fold PLP-dependent enzyme 0.56 QEN71_RS01085 biotin synthase BioB — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_03566 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase 0.57 H281DRAFT_02097 biotin synthase low > 103
Paraburkholderia graminis OAS925 0.37 ABIE53_004690 alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase 0.57 ABIE53_000577 biotin synthase low > 113
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS34440 serine--glyoxylate aminotransferase 0.57 BPHYT_RS02150 biotin synthase low > 109
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS30400 serine--glyoxylate aminotransferase 0.56 RR42_RS00940 biotin synthase low > 128
Variovorax sp. SCN45 0.33 GFF1369 Serine--glyoxylate aminotransferase (EC 2.6.1.45) 0.50 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Variovorax sp. OAS795 0.32 ABID97_RS15840 aminotransferase class V-fold PLP-dependent enzyme 0.49 ABID97_RS13955 biotin synthase BioB low > 91
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0191 Serine--glyoxylate transaminase 0.50 Synpcc7942_0419 bioB biotin synthase — —
Methanococcus maripaludis S2 0.22 MMP_RS02090 alanine--glyoxylate aminotransferase family protein 0.18 MMP_RS06370 biotin synthase BioB — —
Methanococcus maripaludis JJ 0.22 MMJJ_RS03215 alanine--glyoxylate aminotransferase family protein 0.17 MMJJ_RS07980 biotin synthase BioB — —
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_1715 aminotransferase class V (RefSeq) 0.25 DvMF_1001 biotin synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0494 aminotransferase, class V (TIGR) 0.25 DVU2558 bioB biotin synthase (Dmitry Rodionov) — —
Shewanella loihica PV-4 0.16 Shew_0294 alanine--glyoxylate transaminase (RefSeq) 0.56 Shew_1719 biotin synthase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.16 CSW01_02070 alanine--glyoxylate aminotransferase family protein 0.57 CSW01_05645 biotin synthase 0.48 44
Shewanella amazonensis SB2B 0.15 Sama_3277 Serine--pyruvate transaminase (RefSeq) 0.60 Sama_1438 biotin synthase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.15 AMB_RS22510 alanine--glyoxylate aminotransferase family protein 0.57 AMB_RS13865 biotin synthase — —
Shewanella oneidensis MR-1 0.15 SO4343 aminotransferase, class V (NCBI ptt file) 0.59 SO2740 bioB biotin synthase (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.15 MIT1002_02020 Purine catabolism protein PucG 0.58 MIT1002_01379 Biotin synthase low > 70
Shewanella sp. ANA-3 0.15 Shewana3_0360 alanine-glyoxylate aminotransferase (RefSeq) 0.59 Shewana3_2519 biotin synthase (RefSeq) low > 73
Klebsiella michiganensis M5al 0.14 BWI76_RS10590 class V aminotransferase 0.58 BWI76_RS08760 biotin synthase low > 92
Dickeya dianthicola ME23 0.14 DZA65_RS17800 alanine--glyoxylate aminotransferase family protein 0.57 DZA65_RS08965 biotin synthase BioB low > 75
Serratia liquefaciens MT49 0.14 IAI46_04270 alanine--glyoxylate aminotransferase family protein 0.56 IAI46_06525 biotin synthase BioB low > 86
Pantoea sp. MT58 0.14 IAI47_15250 alanine--glyoxylate aminotransferase family protein 0.58 IAI47_13530 biotin synthase BioB low > 76
Rahnella sp. WP5 0.14 EX31_RS21100 alanine--glyoxylate aminotransferase family protein 0.57 EX31_RS23695 biotin synthase BioB low > 89
Enterobacter sp. TBS_079 0.14 MPMX20_01672 (S)-ureidoglycine--glyoxylate transaminase 0.56 MPMX20_01403 Biotin synthase low > 85
Dickeya dianthicola 67-19 0.14 HGI48_RS16710 alanine--glyoxylate aminotransferase family protein 0.56 HGI48_RS08675 biotin synthase BioB low > 71
Pectobacterium carotovorum WPP14 0.14 HER17_RS04560 alanine--glyoxylate aminotransferase family protein 0.57 HER17_RS13460 biotin synthase BioB low > 75
Dickeya dadantii 3937 0.13 DDA3937_RS16640 alanine--glyoxylate aminotransferase family protein 0.57 DDA3937_RS08510 biotin synthase BioB low > 74
Enterobacter asburiae PDN3 0.13 EX28DRAFT_1934 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 0.56 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.363.1 Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) 0.56 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) low > 74
Phocaeicola dorei CL03T12C01 0.12 ABI39_RS15035 2-aminoethylphosphonate--pyruvate transaminase 0.22 ABI39_RS14240 biotin synthase BioB low > 72
Phocaeicola vulgatus CL09T03C04 0.12 HMPREF1058_RS18720 2-aminoethylphosphonate--pyruvate transaminase 0.22 HMPREF1058_RS17950 biotin synthase BioB low > 67
Caulobacter crescentus NA1000 0.12 CCNA_02687 serine-pyruvate aminotransferase 0.56 CCNA_03636 biotin synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.12 CCNA_02687 serine-pyruvate aminotransferase 0.56 CCNA_03636 biotin synthase low > 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.11 GFF4333 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) 0.57 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Agrobacterium fabrum C58 0.09 Atu3217 aspartate aminotransferase 0.63 Atu3997 biotin synthetase low > 89
Pseudomonas simiae WCS417 0.08 PS417_17145 2-aminoethylphosphonate--pyruvate aminotransferase 0.58 PS417_26005 biotin synthase low > 88
Pseudomonas fluorescens FW300-N1B4 0.08 Pf1N1B4_3959 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) 0.59 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N2E3 0.08 AO353_20240 2-aminoethylphosphonate--pyruvate aminotransferase 0.58 AO353_07525 biotin synthase 0.25 83
Parabacteroides merdae CL09T00C40 0.08 HMPREF1078_RS07055 2-aminoethylphosphonate--pyruvate transaminase 0.25 HMPREF1078_RS15300 biotin synthase BioB low > 61
Pseudomonas fluorescens GW456-L13 0.08 PfGW456L13_2571 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) 0.58 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Echinicola vietnamensis KMM 6221, DSM 17526 0.07 Echvi_1811 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 0.53 Echvi_2566 biotin synthetase — —

Not shown: 8 genomes with orthologs for TX73_004070 only; 49 genomes with orthologs for TX73_010535 only