Conservation of cofitness between SMc00114 and SMc00458 in Sinorhizobium meliloti 1021

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc00114 protease II oligopeptidase B hydrolase serine protease 1.0 SMc00458 transcriptional regulator 0.66 3
Rhizobium sp. OAE497 0.85 ABIE40_RS04845 S9 family peptidase 0.89 ABIE40_RS05660 response regulator transcription factor low > 107
Agrobacterium fabrum C58 0.79 Atu0897 protease II 0.91 Atu0970 two component response regulator — —
Rhodopseudomonas palustris CGA009 0.55 TX73_008065 S9 family peptidase 0.78 TX73_009870 response regulator transcription factor low > 86
Bosea sp. OAE506 0.53 ABIE41_RS22470 S9 family peptidase 0.78 ABIE41_RS21475 response regulator transcription factor low > 77
Caulobacter crescentus NA1000 0.50 CCNA_00985 protease II PtrB 0.65 CCNA_02854 two-component response regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00985 protease II PtrB 0.65 CCNA_02854 two-component response regulator low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS06115 S9 family peptidase 0.66 A4249_RS15665 response regulator transcription factor low > 48
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_2324 Protease II 0.50 B158DRAFT_1560 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 40
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS20860 oligopeptidase B 0.33 CA265_RS00370 DNA-binding response regulator low > 88
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_1842 Protease II 0.70 Ga0059261_1369 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 68
Alteromonas macleodii MIT1002 0.36 MIT1002_02578 Protease 2 0.52 MIT1002_01421 Transcriptional regulatory protein PhoP low > 70
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.842.1 Protease II (EC 3.4.21.83) 0.56 Xcc-8004.5008.1 Two-component system regulatory protein — —
Lysobacter sp. OAE881 0.35 ABIE51_RS03010 S9 family peptidase 0.55 ABIE51_RS03940 response regulator transcription factor low > 62
Shewanella sp. ANA-3 0.34 Shewana3_0135 oligopeptidase B (RefSeq) 0.49 Shewana3_4025 two component transcriptional regulator (RefSeq) low > 73
Rahnella sp. WP5 0.34 EX31_RS24750 prolyl oligopeptidase family serine peptidase 0.42 EX31_RS24560 two-component system response regulator PhoP low > 89
Shewanella oneidensis MR-1 0.34 SO0144 ptrB protease II (NCBI ptt file) 0.50 SO4647 DNA-binding response regulator (NCBI ptt file) 0.25 17
Serratia liquefaciens MT49 0.33 IAI46_09975 prolyl oligopeptidase family serine peptidase 0.42 IAI46_10395 two-component system response regulator PhoP low > 86
Shewanella amazonensis SB2B 0.32 Sama_0144 oligopeptidase B (RefSeq) 0.53 Sama_3303 response regulator receiver protein (RefSeq) low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_01886 Protease 2 0.41 OHPLBJKB_02538 Transcriptional regulatory protein PhoP low > 73
Escherichia fergusonii Becca 0.32 EFB2_02099 Protease 2 0.41 EFB2_02845 Transcriptional regulatory protein PhoP low > 86
Escherichia coli ECOR38 0.32 HEPCGN_04780 ptrB oligopeptidase B 0.41 HEPCGN_24200 phoP two-component system response regulator PhoP low > 87
Escherichia coli ECRC99 0.32 KEDOAH_01725 ptrB oligopeptidase B 0.40 KEDOAH_24815 phoP two-component system response regulator PhoP — —
Escherichia coli ECOR27 0.32 NOLOHH_16890 ptrB oligopeptidase B 0.41 NOLOHH_20915 phoP two-component system response regulator PhoP low > 75
Escherichia coli ECRC98 0.32 JDDGAC_00955 ptrB oligopeptidase B 0.40 JDDGAC_06635 phoP two-component system response regulator PhoP low > 86
Escherichia coli ECRC102 0.32 NIAGMN_01680 ptrB oligopeptidase B 0.40 NIAGMN_24875 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC100 0.32 OKFHMN_26380 ptrB oligopeptidase B 0.40 OKFHMN_00730 phoP two-component system response regulator PhoP low > 80
Escherichia coli ECRC62 0.32 BNILDI_15685 ptrB oligopeptidase B 0.41 BNILDI_19080 phoP two-component system response regulator PhoP low > 75
Escherichia coli ECRC101 0.32 MCAODC_19025 ptrB oligopeptidase B 0.40 MCAODC_22355 phoP two-component system response regulator PhoP low > 87
Escherichia coli BL21 0.32 ECD_01816 protease II 0.41 ECD_01128 response regulator in two-component regulatory system with PhoQ — —
Enterobacter sp. TBS_079 0.32 MPMX20_02752 Protease 2 0.41 MPMX20_01811 Transcriptional regulatory protein PhoP low > 85
Escherichia coli BW25113 0.32 b1845 ptrB protease II (NCBI) 0.41 b1130 phoP DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF1624 Protease II (EC 3.4.21.83) 0.41 GFF3138 Two-component system response regulator QseB low > 78
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0709 Protease II 0.41 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Pseudomonas sp. RS175 0.31 PFR28_00723 Dipeptidyl aminopeptidase BI 0.44 PFR28_02847 Transcriptional regulatory protein QseB low > 88
Pectobacterium carotovorum WPP14 0.31 HER17_RS11765 prolyl oligopeptidase family serine peptidase 0.42 HER17_RS11640 two-component system response regulator PhoP low > 75
Pantoea sp. MT58 0.31 IAI47_08515 prolyl oligopeptidase family serine peptidase 0.41 IAI47_11930 two-component system response regulator PhoP low > 76
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.46 Psyr_3212 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Klebsiella michiganensis M5al 0.31 BWI76_RS18075 oligopeptidase B 0.41 BWI76_RS11280 two-component system response regulator PhoP — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.46 Psyr_3212 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas stutzeri RCH2 0.31 Psest_2655 Protease II 0.48 Psest_3533 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_04360 peptidase S9 0.44 AO356_21280 transcriptional regulator low > 104
Pseudomonas putida KT2440 0.31 PP_4583 putative Peptidase 0.46 PP_2347 DNA-binding response regulator low > 96
Dickeya dadantii 3937 0.31 DDA3937_RS10150 prolyl oligopeptidase family serine peptidase 0.39 DDA3937_RS11500 two-component system response regulator PhoP low > 74
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_2713 Protease II (EC 3.4.21.83) 0.44 Pf6N2E2_41 Two-component system response regulator QseB low > 103
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_3357 Protease II (EC 3.4.21.83) 0.45 Pf1N1B4_105 Two-component system response regulator QseB — —
Shewanella loihica PV-4 0.30 Shew_0039 oligopeptidase B (RefSeq) 0.52 Shew_2695 two component transcriptional regulator (RefSeq) low > 60
Pseudomonas sp. S08-1 0.30 OH686_05270 Protease II 0.46 OH686_00055 Two-component system response regulator QseB low > 80
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_17950 peptidase S9 0.44 AO353_19775 transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_4484 Protease II (EC 3.4.21.83) 0.44 PfGW456L13_2451 Two-component system response regulator QseB low > 87
Pseudomonas simiae WCS417 0.29 PS417_07445 peptidase S9 0.46 PS417_10270 transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS07530 S9 family peptidase 0.46 PFLU_RS10435 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS07530 S9 family peptidase 0.46 PFLU_RS10435 response regulator transcription factor low > 109
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_14340 S9 family peptidase 0.53 CSW01_08235 DNA-binding response regulator low > 62
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS07925 prolyl oligopeptidase family serine peptidase 0.53 LRK54_RS05985 response regulator transcription factor low > 59
Rhodanobacter denitrificans MT42 0.13 LRK55_RS07655 prolyl oligopeptidase family serine peptidase 0.53 LRK55_RS05740 response regulator transcription factor — —
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_14405 Peptidase S9 0.54 OKGIIK_00635 ompR DNA-binding response regulator — —
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS17900 prolyl oligopeptidase family serine peptidase 0.54 ABZR86_RS18360 response regulator transcription factor low > 74

Not shown: 4 genomes with orthologs for SMc00114 only; 17 genomes with orthologs for SMc00458 only