| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS10885 | | DNAase | 1.0 | RR42_RS34650 | | LacI family transcriptional regulator | 0.37 | 18 |
| Ralstonia solanacearum GMI1000 | 0.77 | RS_RS09020 | | TatD family deoxyribonuclease | 0.23 | RS_RS05020 | | LacI family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.76 | RALBFv3_RS01010 | | TatD family deoxyribonuclease | 0.22 | RALBFv3_RS14240 | | LacI family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.76 | UW163_RS14320 | | TatD family deoxyribonuclease | 0.22 | UW163_RS11705 | | LacI family transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.76 | RPSI07_RS16465 | | TatD family deoxyribonuclease | 0.23 | RPSI07_RS19225 | | LacI family transcriptional regulator | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.76 | ABZR87_RS12460 | | TatD family hydrolase | 0.23 | ABZR87_RS09955 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.70 | HSERO_RS12995 | | DNAase | 0.22 | HSERO_RS11495 | | LacI family transcription regulator | low | > 78 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.69 | H281DRAFT_00931 | | TatD DNase family protein | 0.22 | H281DRAFT_03227 | | transcriptional regulator, LacI family | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.69 | QEN71_RS21805 | | TatD family hydrolase | 0.21 | QEN71_RS38555 | | substrate-binding domain-containing protein | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.69 | ABIE53_002166 | | TatD DNase family protein | 0.22 | ABIE53_004064 | | DNA-binding LacI/PurR family transcriptional regulator | low | > 113 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.62 | GFF4665 | | Putative deoxyribonuclease YcfH | 0.22 | GFF4377 | | Galactose operon repressor, GalR-LacI family of transcriptional regulators | low | > 90 |
| Variovorax sp. SCN45 | 0.60 | GFF34 | | Uncharacterized metal-dependent hydrolase YcfH | 0.44 | GFF3450 | | Transcriptional regulator, LacI family | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_2488 | | Putative deoxyribonuclease YcfH | 0.20 | Ac3H11_1840 | | Ribose operon repressor | low | > 79 |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS16000 | | TatD family hydrolase | 0.44 | ABID97_RS03270 | | LacI family DNA-binding transcriptional regulator | low | > 91 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_2112 | | Putative deoxyribonuclease YcfH | 0.20 | PfGW456L13_3909 | | Ribose operon repressor | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.48 | AO353_01325 | | hydrolase TatD | 0.23 | AO353_20830 | | LacI family transcriptional regulator | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_1696 | | hydrolase, TatD family | 0.15 | Psest_3356 | | D-fructose-responsive transcription factor | low | > 67 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS23020 | | TatD family hydrolase | 0.21 | PFLU_RS15195 | | LacI family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS23020 | | TatD family hydrolase | 0.21 | PFLU_RS15195 | | LacI family transcriptional regulator | 0.12 | 59 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01469 | | putative metal-dependent hydrolase YcfH | 0.21 | MPMX19_05875 | | Catabolite control protein A | low | > 112 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_21405 | | hydrolase TatD | 0.20 | PS417_13650 | | LacI family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_5960 | | Putative deoxyribonuclease YcfH | 0.21 | Pf6N2E2_164 | | Ribose operon repressor | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_1655 | | TatD-related deoxyribonuclease | 0.21 | Psyr_2154 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_1655 | | TatD-related deoxyribonuclease | 0.21 | Psyr_2154 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_03002 | | putative metal-dependent hydrolase YcfH | 0.21 | PFR28_02734 | | Ribose operon repressor | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_420 | | Putative deoxyribonuclease YcfH | 0.22 | Pf1N1B4_6032 | | Ribose operon repressor | low | > 87 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_10060 | | YchF/TatD family DNA exonuclease | 0.23 | CSW01_14670 | | transcriptional repressor PurR | 0.40 | 19 |
| Dickeya dadantii 3937 | 0.45 | DDA3937_RS13085 | | metal-dependent hydrolase | 0.23 | DDA3937_RS00055 | | ribose operon transcriptional repressor RbsR | low | > 74 |
| Shewanella loihica PV-4 | 0.44 | Shew_1582 | | TatD family hydrolase (RefSeq) | 0.17 | Shew_1111 | | LacI family transcription regulator (RefSeq) | low | > 60 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_09825 | | metal-dependent hydrolase | 0.23 | IAI46_25050 | | ribose operon transcriptional repressor RbsR | low | > 86 |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS13150 | | metal-dependent hydrolase | 0.22 | HGI48_RS21310 | | ribose operon transcriptional repressor RbsR | low | > 71 |
| Sphingomonas koreensis DSMZ 15582 | 0.43 | Ga0059261_0126 | | hydrolase, TatD family | 0.21 | Ga0059261_2309 | | transcriptional regulator, LacI family | low | > 68 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS11125 | | metal-dependent hydrolase | 0.23 | BWI76_RS00765 | | DNA-binding transcriptional regulator CytR | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS08685 | | metal-dependent hydrolase | 0.23 | HER17_RS21525 | | ribose operon transcriptional repressor RbsR | low | > 75 |
| Pantoea sp. MT58 | 0.43 | IAI47_12035 | | metal-dependent hydrolase | 0.22 | IAI47_00375 | | ribose operon transcriptional repressor RbsR | low | > 76 |
| Escherichia coli BW25113 | 0.42 | b1100 | ycfH | predicted metallodependent hydrolase (NCBI) | 0.23 | b3934 | cytR | DNA-binding transcriptional dual regulator (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_02566 | | putative metal-dependent hydrolase YcfH | 0.23 | OHPLBJKB_04117 | | HTH-type transcriptional repressor CytR | low | > 73 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_21070 | ycfH | metal-dependent hydrolase | 0.23 | NOLOHH_05870 | cytR | DNA-binding transcriptional regulator CytR | — | — |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_07200 | ycfH | metal-dependent hydrolase | 0.23 | JDDGAC_17350 | cytR | DNA-binding transcriptional regulator CytR | low | > 86 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_24290 | ycfH | metal-dependent hydrolase | 0.23 | NIAGMN_11480 | cytR | DNA-binding transcriptional regulator CytR | — | — |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_03540 | ycfH | metal-dependent hydrolase | 0.23 | OKFHMN_13725 | cytR | DNA-binding transcriptional regulator CytR | low | > 80 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS06350 | | metal-dependent hydrolase | 0.23 | ECOLIN_RS22650 | | DNA-binding transcriptional regulator CytR | low | > 55 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_23940 | ycfH | metal-dependent hydrolase | 0.23 | HEPCGN_12370 | cytR | DNA-binding transcriptional regulator CytR | low | > 87 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_22900 | ycfH | metal-dependent hydrolase | 0.23 | MCAODC_04225 | cytR | DNA-binding transcriptional regulator CytR | low | > 87 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_24215 | ycfH | metal-dependent hydrolase | 0.23 | KEDOAH_14435 | cytR | DNA-binding transcriptional regulator CytR | — | — |
| Escherichia coli BL21 | 0.42 | ECD_01096 | | putative DNase | 0.23 | ECD_03819 | | Anti-activator for CytR-CRP nucleoside utilization regulon | low | > 61 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_19230 | ycfH | metal-dependent hydrolase | 0.23 | BNILDI_05660 | cytR | DNA-binding transcriptional regulator CytR | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF3382 | | Putative deoxyribonuclease YcfH | 0.23 | GFF2316 | | Transcriptional (co)regulator CytR | low | > 78 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_01780 | | putative metal-dependent hydrolase YcfH | 0.24 | MPMX20_00737 | | Maltose regulon regulatory protein MalI | low | > 85 |
| Escherichia fergusonii Becca | 0.42 | EFB2_02875 | | putative metal-dependent hydrolase YcfH | 0.23 | EFB2_04684 | | HTH-type transcriptional repressor CytR | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.41 | SMc01193 | | hypothetical protein | 0.24 | SM_b20014 | | transcriptional regulator | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_0920 | | hydrolase, TatD family (RefSeq) | 0.22 | Dshi_2238 | | transcriptional regulator, LacI family (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.37 | ABIE41_RS15945 | | TatD family hydrolase | 0.24 | ABIE41_RS06440 | | LacI family DNA-binding transcriptional regulator | low | > 77 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS09480 | | TatD family hydrolase | 0.22 | ABIE40_RS16645 | | LacI family DNA-binding transcriptional regulator | low | > 107 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS25085 | | hydrolase TatD | 0.18 | CA265_RS21915 | | LacI family transcriptional regulator | low | > 88 |
| Mycobacterium tuberculosis H37Rv | 0.27 | Rv1008 | | Probable deoxyribonuclease TatD (YJJV protein) | 0.16 | Rv3575c | | Transcriptional regulatory protein (probably LacI-family) | low | > 58 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.26 | ABZR88_RS21615 | | TatD family hydrolase | 0.21 | ABZR88_RS16160 | | LacI family DNA-binding transcriptional regulator | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_0081 | | hydrolase, TatD family | 0.25 | Echvi_3073 | | Transcriptional regulators | low | > 79 |
| Bacteroides ovatus ATCC 8483 | 0.23 | BACOVA_00646 | | hydrolase, TatD family | 0.20 | BACOVA_02049 | | sugar-binding domain protein | low | > 94 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS14230 | | TatD family hydrolase | 0.18 | HMPREF1058_RS09530 | | LacI family DNA-binding transcriptional regulator | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS09860 | | TatD family hydrolase | 0.19 | ABI39_RS03985 | | LacI family DNA-binding transcriptional regulator | low | > 72 |
Not shown: 33 genomes with orthologs for RR42_RS10885 only; 9 genomes with orthologs for RR42_RS34650 only