Conservation of cofitness between RR42_RS04710 and RR42_RS13720 in Cupriavidus basilensis FW507-4G11

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS04710 50S rRNA methyltransferase 1.0 RR42_RS13720 oxidoreductase 0.32 8
Ralstonia sp. UNC404CL21Col 0.85 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 ABZR87_RS08800 NADH:flavin oxidoreductase/NADH oxidase low > 80
Ralstonia solanacearum UW163 0.84 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 UW163_RS00815 NADH:flavin oxidoreductase/NADH oxidase — —
Ralstonia solanacearum IBSBF1503 0.84 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 RALBFv3_RS12750 NADH:flavin oxidoreductase/NADH oxidase low > 76
Ralstonia solanacearum GMI1000 0.84 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.58 RS_RS03530 NADH:flavin oxidoreductase/NADH oxidase — —
Ralstonia solanacearum PSI07 0.84 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.58 RPSI07_RS20510 NADH:flavin oxidoreductase/NADH oxidase low > 81
Paraburkholderia graminis OAS925 0.76 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.63 ABIE53_000285 2,4-dienoyl-CoA reductase-like NADH-dependent reductase (Old Yellow Enzyme family) — —
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 QEN71_RS29455 NADH:flavin oxidoreductase/NADH oxidase low > 153
Herbaspirillum seropedicae SmR1 0.76 HSERO_RS17780 50S rRNA methyltransferase 0.42 HSERO_RS17215 oxidoreductase low > 78
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.63 H281DRAFT_02365 2,4-dienoyl-CoA reductase low > 103
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.64 BPHYT_RS19550 oxidoreductase low > 109
Dechlorosoma suillum PS 0.60 Dsui_0451 hypothetical protein 0.54 Dsui_0427 NADH:flavin oxidoreductase low > 51
Variovorax sp. OAS795 0.57 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.81 ABID97_RS28740 NADH:flavin oxidoreductase/NADH oxidase low > 91
Variovorax sp. SCN45 0.57 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.76 GFF5180 NADH:flavin oxidoreductases, Old Yellow Enzyme family low > 127
Rhodanobacter denitrificans MT42 0.48 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 LRK55_RS14500 NADH:flavin oxidoreductase/NADH oxidase low > 63
Pantoea sp. MT58 0.48 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 IAI47_09960 NADH:flavin oxidoreductase/NADH oxidase low > 76
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 LRK54_RS14785 NADH:flavin oxidoreductase/NADH oxidase low > 59
Pectobacterium carotovorum WPP14 0.48 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 HER17_RS08565 NADH:flavin oxidoreductase/NADH oxidase low > 75
Dickeya dianthicola ME23 0.47 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 DZA65_RS13740 NADH:flavin oxidoreductase/NADH oxidase low > 75
Serratia liquefaciens MT49 0.47 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 IAI46_09680 NADH:flavin oxidoreductase/NADH oxidase low > 86
Dickeya dadantii 3937 0.47 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 DDA3937_RS13200 NADH:flavin oxidoreductase/NADH oxidase — —
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 OKGIIK_03610 fadH oxidoreductase low > 52
Rahnella sp. WP5 0.47 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 EX31_RS24330 NADH:flavin oxidoreductase/NADH oxidase low > 89
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 ABZR86_RS00545 NADH:flavin oxidoreductase/NADH oxidase low > 74
Dickeya dianthicola 67-19 0.47 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 HGI48_RS13265 NADH:flavin oxidoreductase/NADH oxidase — —
Pseudomonas simiae WCS417 0.43 PS417_24730 50S rRNA methyltransferase 0.42 PS417_05890 oxidoreductase — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 PFLU_RS05960 NADH:flavin oxidoreductase/NADH oxidase low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 PFLU_RS05960 NADH:flavin oxidoreductase/NADH oxidase low > 109
Lysobacter sp. OAE881 0.43 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 ABIE51_RS06830 NADH:flavin oxidoreductase/NADH oxidase low > 62
Pseudomonas sp. RS175 0.43 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.41 PFR28_00340 NADPH dehydrogenase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4366 Protein of unknown function DUF163 0.44 Psyr_1299 NADH:flavin oxidoreductase/NADH oxidase low > 86
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_06480 50S rRNA methyltransferase 0.42 AO353_04315 oxidoreductase low > 101
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4366 Protein of unknown function DUF163 0.44 Psyr_1299 NADH:flavin oxidoreductase/NADH oxidase — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.41 Pf1N1B4_3021 NADH:flavin oxidoreductases, Old Yellow Enzyme family — —
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.42 PfGW456L13_1731 NADH:flavin oxidoreductases, Old Yellow Enzyme family low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.43 Psest_1546 NADH:flavin oxidoreductases, Old Yellow Enzyme family low > 67
Pseudomonas putida KT2440 0.42 PP_4808 23S rRNA m3psi1915 methyltransferase 0.41 PP_1478 putative Xenobiotic reductase low > 96
Acinetobacter radioresistens SK82 0.39 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.51 MPMX26_02484 NADPH dehydrogenase low > 36
Magnetospirillum magneticum AMB-1 0.38 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 AMB_RS14545 NADH:flavin oxidoreductase/NADH oxidase low > 64
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.56 Xcc-8004.392.1 FMN oxidoreductase — —
Rhizobium sp. OAE497 0.33 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.61 ABIE40_RS26575 NADH:flavin oxidoreductase/NADH oxidase low > 107
Fusobacterium nucleatum SB010 0.30 HUW76_07715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.17 HUW76_04430 NADH:flavin oxidoreductase low > 35
Bifidobacterium breve UCC2003 0.29 BBR_RS19685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 BBR_RS12890 NADH:flavin oxidoreductase/NADH oxidase low > 34
Rhodopseudomonas palustris CGA009 0.28 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 TX73_006725 NADH:flavin oxidoreductase/NADH oxidase low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS17055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 ABZR88_RS22115 NADPH dehydrogenase NamA low > 71
Rhodospirillum rubrum S1H 0.26 Rru_A1235 Protein of unknown function DUF163 (NCBI) 0.61 Rru_A0144 NADH:flavin oxidoreductase/NADH oxidase (NCBI) low > 58
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS16470 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 CA265_RS22465 oxidoreductase low > 88
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_2503 Predicted SPOUT methyltransferase 0.35 Ga0059261_2880 NADH:flavin oxidoreductases, Old Yellow Enzyme family low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS14825 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 A4249_RS03505 NADH:flavin oxidoreductase/NADH oxidase low > 48

Not shown: 46 genomes with orthologs for RR42_RS04710 only; 2 genomes with orthologs for RR42_RS13720 only