| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS04710 | | 50S rRNA methyltransferase | 1.0 | RR42_RS02055 | | ATP-dependent protease | 0.30 | 18 |
| Ralstonia sp. UNC404CL21Col | 0.85 | ABZR87_RS15430 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.58 | ABZR87_RS07030 | | LON peptidase substrate-binding domain-containing protein | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.84 | RALBFv3_RS03565 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.57 | RALBFv3_RS11140 | | ATP-dependent protease | low | > 76 |
| Ralstonia solanacearum UW163 | 0.84 | UW163_RS10105 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.57 | UW163_RS02440 | | ATP-dependent protease | — | — |
| Ralstonia solanacearum PSI07 | 0.84 | RPSI07_RS13660 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.57 | RPSI07_RS22160 | | ATP-dependent protease | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.84 | RS_RS11015 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.55 | RS_RS01990 | | ATP-dependent protease | — | — |
| Paraburkholderia graminis OAS925 | 0.76 | ABIE53_001541 | | 23S rRNA (pseudouridine1915-N3)-methyltransferase | 0.55 | ABIE53_000713 | | Lon protease-like protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.76 | QEN71_RS24420 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.55 | QEN71_RS01730 | | LON peptidase substrate-binding domain-containing protein | low | > 153 |
| Herbaspirillum seropedicae SmR1 | 0.76 | HSERO_RS17780 | | 50S rRNA methyltransferase | 0.27 | HSERO_RS21705 | | peptidase S16 | low | > 78 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.75 | H281DRAFT_04517 | | 23S rRNA (pseudouridine1915-N3)-methyltransferase | 0.55 | H281DRAFT_01932 | | hypothetical protein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.75 | BPHYT_RS06385 | | ribosomal RNA large subunit methyltransferase H | 0.55 | BPHYT_RS02880 | | ATP-dependent protease | low | > 109 |
| Dechlorosoma suillum PS | 0.60 | Dsui_0451 | | hypothetical protein | 0.33 | Dsui_0994 | | peptidase S16, lon domain protein | low | > 51 |
| Variovorax sp. OAS795 | 0.57 | ABID97_RS16715 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.31 | ABID97_RS08410 | | LON peptidase substrate-binding domain-containing protein | low | > 91 |
| Variovorax sp. SCN45 | 0.57 | GFF298 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) | 0.30 | GFF3879 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.55 | GFF4529 | | LSU m3Psi1915 methyltransferase RlmH | 0.30 | GFF3352 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.54 | Ac3H11_2418 | | LSU m3Psi1915 methyltransferase RlmH | 0.27 | Ac3H11_1538 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 79 |
| Shewanella loihica PV-4 | 0.50 | Shew_2934 | | SPOUT methyltransferase superfamily protein (RefSeq) | 0.13 | Shew_1475 | | hypothetical protein (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_04865 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.17 | CSW01_11720 | | ATP-dependent protease | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.48 | LRK55_RS02450 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.27 | LRK55_RS06350 | | LON peptidase substrate-binding domain-containing protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS02695 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.27 | LRK54_RS06605 | | LON peptidase substrate-binding domain-containing protein | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_09750 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.25 | OKGIIK_17025 | | peptidase S16 | low | > 52 |
| Shewanella oneidensis MR-1 | 0.47 | SO1169 | | conserved hypothetical protein TIGR00246 (NCBI ptt file) | 0.17 | SO1987 | | ATP-dependent protease La (LON) domain protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_0996 | | rRNA large subunit methyltransferase (RefSeq) | 0.18 | Shewana3_2464 | | peptidase S16, lon domain-containing protein (RefSeq) | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS09055 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.22 | ABZR86_RS17380 | | LON peptidase substrate-binding domain-containing protein | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.46 | B158DRAFT_0085 | | rRNA large subunit m3Psi methyltransferase RlmH | 0.23 | B158DRAFT_2039 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_01852 | | Ribosomal RNA large subunit methyltransferase H | 0.17 | MIT1002_02683 | | hypothetical protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS26660 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.18 | PFLU_RS26695 | | ATP-dependent protease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS26660 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.18 | PFLU_RS26695 | | ATP-dependent protease | low | > 109 |
| Pseudomonas simiae WCS417 | 0.43 | PS417_24730 | | 50S rRNA methyltransferase | 0.18 | PS417_24760 | | ATP-dependent protease | — | — |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS06755 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.19 | ABIE51_RS17445 | | LON peptidase substrate-binding domain-containing protein | low | > 62 |
| Pseudomonas sp. RS175 | 0.43 | PFR28_03869 | | Ribosomal RNA large subunit methyltransferase H | 0.18 | PFR28_03875 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_15305 | | 50S rRNA methyltransferase | 0.20 | AO356_15275 | | ATP-dependent protease | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_4996 | | LSU m3Psi1915 methyltransferase RlmH | 0.20 | Pf6N2E2_4990 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_4366 | | Protein of unknown function DUF163 | 0.21 | Psyr_0638 | | Peptidase S16, lon N-terminal | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_06480 | | 50S rRNA methyltransferase | 0.20 | AO353_06510 | | ATP-dependent protease | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_4366 | | Protein of unknown function DUF163 | 0.21 | Psyr_0638 | | Peptidase S16, lon N-terminal | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2691 | | LSU m3Psi1915 methyltransferase RlmH | 0.20 | Pf1N1B4_2684 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1359 | | LSU m3Psi1915 methyltransferase RlmH | 0.20 | PfGW456L13_1352 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_0511 | | rRNA large subunit m3Psi methyltransferase RlmH | 0.17 | Psest_0506 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 67 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_09325 | | rRNA large subunit m3Psi methyltransferase RlmH | 0.18 | OH686_09355 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | low | > 80 |
| Pseudomonas putida KT2440 | 0.42 | PP_4808 | | 23S rRNA m3psi1915 methyltransferase | 0.21 | PP_4814 | | ATP-dependent protease La domain protein | low | > 96 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1876.1 | | LSU m3Psi1915 methyltransferase RlmH | 0.26 | Xcc-8004.1108.1 | | Uncharacterized protein, similar to the N-terminal domain of Lon protease | — | — |
Not shown: 53 genomes with orthologs for RR42_RS04710 only; 0 genomes with orthologs for RR42_RS02055 only