| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS27790 | | Nif3-like dinuclear metal center hexameric protein | 1.0 | QEN71_RS02475 | | response regulator | 0.58 | 5 |
| Paraburkholderia graminis OAS925 | 0.81 | ABIE53_003686 | | dinuclear metal center YbgI/SA1388 family protein | 0.96 | ABIE53_003418 | | two-component system response regulator QseB | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.80 | H281DRAFT_05668 | | dinuclear metal center protein, YbgI/SA1388 family | 0.95 | H281DRAFT_04180 | | two component transcriptional regulator, winged helix family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.79 | BPHYT_RS17635 | | metal-binding protein | 0.95 | BPHYT_RS16220 | | transcriptional regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.65 | ABZR87_RS02395 | | Nif3-like dinuclear metal center hexameric protein | 0.66 | ABZR87_RS22890 | | response regulator transcription factor | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.65 | RPSI07_RS10495 | | Nif3-like dinuclear metal center hexameric protein | 0.65 | RPSI07_RS07290 | | DNA-binding response regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.64 | RS_RS14685 | | Nif3-like dinuclear metal center hexameric protein | 0.67 | RS_RS24590 | | DNA-binding response regulator | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.64 | RALBFv3_RS06740 | | Nif3-like dinuclear metal center hexameric protein | 0.65 | RALBFv3_RS16415 | | DNA-binding response regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.64 | UW163_RS06875 | | Nif3-like dinuclear metal center hexameric protein | 0.65 | UW163_RS17155 | | DNA-binding response regulator | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.64 | RR42_RS18835 | | Nif3-like dinuclear metal center hexameric protein | 0.68 | RR42_RS37390 | | XRE family transcriptional regulator | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS20255 | | metal-binding protein | 0.68 | HSERO_RS21985 | | transcriptional regulator | low | > 78 |
| Dechlorosoma suillum PS | 0.54 | Dsui_1427 | | dinuclear metal center protein, YbgI/SA1388 family | 0.56 | Dsui_2248 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | low | > 51 |
| Pseudomonas putida KT2440 | 0.52 | PP_1302 | | putative metal-binding hydrolase-oxidase enzyme | 0.57 | PP_2713 | | DNA-binding response regulator | low | > 96 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_1758 | | hypothetical protein (RefSeq) | 0.42 | Shewana3_1885 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.52 | SO2621 | | conserved hypothetical protein TIGR00486 (NCBI ptt file) | 0.44 | SO2104 | | DNA-binding response regulator YgiX, putative (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_3295 | | dinuclear metal center protein, YbgI/SA1388 family | 0.59 | Psest_3476 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 67 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF1298 | | FIG137478: Hypothetical protein YbgI | 0.65 | GFF700 | | Two-component system response regulator QseB | low | > 90 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_05085 | | metal-binding protein | 0.59 | AO353_23010 | | XRE family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_5256 | | FIG137478: Hypothetical protein YbgI | 0.59 | Pf6N2E2_1539 | | Two-component system response regulator QseB | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_16660 | | metal-binding protein | 0.59 | AO356_23845 | | XRE family transcriptional regulator | low | > 104 |
| Pseudomonas sp. S08-1 | 0.51 | OH686_08455 | | GTP cyclohydrolase 1 type 2-related YbgI | 0.61 | OH686_04665 | | Two-component system response regulator QseB | low | > 80 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_01972 | | metal-binding protein | 0.51 | MIT1002_00810 | | Transcriptional regulatory protein BasR | low | > 70 |
| Shewanella loihica PV-4 | 0.51 | Shew_1572 | | hypothetical protein (RefSeq) | 0.41 | Shew_2695 | | two component transcriptional regulator (RefSeq) | — | — |
| Pseudomonas sp. RS175 | 0.51 | PFR28_00192 | | GTP cyclohydrolase 1 type 2 | 0.60 | PFR28_02328 | | Transcriptional regulatory protein QseB | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_4997 | | FIG137478: Hypothetical protein YbgI | 0.59 | PfGW456L13_3169 | | Two-component system response regulator QseB | low | > 87 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_03710 | | metal-binding protein | 0.58 | PS417_13595 | | XRE family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS03760 | | Nif3-like dinuclear metal center hexameric protein | 0.59 | PFLU_RS15245 | | response regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS03760 | | Nif3-like dinuclear metal center hexameric protein | 0.59 | PFLU_RS15245 | | response regulator | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_4129 | | Protein of unknown function DUF34 | 0.55 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_4129 | | Protein of unknown function DUF34 | 0.55 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Rahnella sp. WP5 | 0.48 | EX31_RS23375 | | type 2 GTP cyclohydrolase I | 0.51 | EX31_RS08605 | | two-component system response regulator PmrA | low | > 89 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_06210 | | type 2 GTP cyclohydrolase I | 0.48 | IAI46_21235 | | response regulator | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS16150 | | type 2 GTP cyclohydrolase I | 0.50 | LU632_RS21175 | pmrA | two-component system response regulator PmrA | low | > 74 |
| Marinobacter adhaerens HP15 | 0.48 | HP15_2426 | | NGG1p interacting factor 3, NIF3 | 0.44 | HP15_3968 | | two component transcriptional regulator, winged helix family | low | > 73 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_01344 | | GTP cyclohydrolase 1 type 2 | 0.54 | MPMX20_03863 | | Transcriptional regulatory protein QseB | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_10460 | | Nif3-like dinuclear metal center hexameric protein | 0.44 | CSW01_19595 | | DNA-binding response regulator | low | > 62 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_2277 | | dinuclear metal center protein, YbgI/SA1388 family | 0.54 | EX28DRAFT_3057 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS14990 | | type 2 GTP cyclohydrolase I | 0.51 | HER17_RS21560 | | response regulator | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF4615 | | FIG137478: Hypothetical protein YbgI | 0.54 | GFF3138 | | Two-component system response regulator QseB | low | > 78 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_26230 | ybgI | radiation resistance protein YbgI | 0.52 | MCAODC_09395 | | Transcriptional regulatory protein QseB | low | > 87 |
| Escherichia fergusonii Becca | 0.47 | EFB2_03393 | | GTP cyclohydrolase 1 type 2 | 0.53 | EFB2_00788 | | Transcriptional regulatory protein QseB | low | > 86 |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_23395 | ybgI | radiation resistance protein YbgI | 0.52 | NOLOHH_10660 | | Transcriptional regulatory protein QseB | low | > 75 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_10665 | ybgI | radiation resistance protein YbgI | 0.52 | JDDGAC_22515 | | Transcriptional regulatory protein QseB | low | > 86 |
| Escherichia coli ECRC100 | 0.47 | OKFHMN_07010 | ybgI | radiation resistance protein YbgI | 0.52 | OKFHMN_18880 | | Transcriptional regulatory protein QseB | low | > 80 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_21390 | ybgI | radiation resistance protein YbgI | 0.52 | BNILDI_00855 | | Transcriptional regulatory protein QseB | low | > 75 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_05065 | ybgI | radiation resistance protein YbgI | 0.52 | NIAGMN_16645 | | Transcriptional regulatory protein QseB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_03007 | | GTP cyclohydrolase 1 type 2 | 0.53 | OHPLBJKB_00677 | | Transcriptional regulatory protein QseB | low | > 73 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_20955 | ybgI | radiation resistance protein YbgI | 0.52 | KEDOAH_09265 | | Transcriptional regulatory protein QseB | — | — |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_01200 | ybgI | radiation resistance protein YbgI | 0.53 | HEPCGN_17740 | | Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | low | > 87 |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS03800 | | radiation resistance protein YbgI | 0.52 | ECOLIN_RS17425 | | quorum sensing response regulator transcription factor QseB | low | > 55 |
| Escherichia coli BW25113 | 0.47 | b0710 | ybgI | conserved metal-binding protein (NCBI) | 0.53 | b3025 | qseB | DNA-binding response regulator in two-component regulatory system with QseC (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.47 | ECD_00670 | | NIF3 family metal-binding protein | 0.53 | ECD_02897 | | quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | low | > 61 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS08345 | | Nif3-like dinuclear metal center protein | 0.52 | BWI76_RS24335 | | two-component system response regulator QseB | low | > 92 |
| Variovorax sp. SCN45 | 0.46 | GFF5367 | | GTP cyclohydrolase 1 type 2 homolog YbgI | 0.66 | GFF1175 | | Two-component system response regulator QseB | low | > 127 |
| Pantoea sp. MT58 | 0.45 | IAI47_13810 | | type 2 GTP cyclohydrolase I | 0.57 | IAI47_00340 | | response regulator | low | > 76 |
| Dickeya dadantii 3937 | 0.45 | DDA3937_RS06410 | | type 2 GTP cyclohydrolase I | 0.49 | DDA3937_RS19350 | | two-component system response regulator PmrA | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_4745 | | FIG137478: Hypothetical protein YbgI | 0.65 | Ac3H11_3946 | | Two-component system response regulator QseB | low | > 79 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS06455 | | type 2 GTP cyclohydrolase I | 0.56 | HGI48_RS21345 | | response regulator | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06800 | | type 2 GTP cyclohydrolase I | 0.55 | DZA65_RS22325 | | response regulator | low | > 75 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS23060 | | Nif3-like dinuclear metal center hexameric protein | 0.66 | ABID97_RS14955 | | response regulator | low | > 91 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_00997 | | GTP cyclohydrolase 1 type 2 | 0.51 | MPMX26_02034 | | Transcriptional regulatory protein QseB | — | — |
Not shown: 5 genomes with orthologs for QEN71_RS27790 only; 20 genomes with orthologs for QEN71_RS02475 only