| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3347 | | transcriptional regulator, TetR family | 1.0 | Psyr_1748 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.49 | 15 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3347 | | transcriptional regulator, TetR family | 1.00 | Psyr_1748 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.25 | 84 |
| Rahnella sp. WP5 | 0.55 | EX31_RS00510 | | TetR/AcrR family transcriptional regulator | 0.74 | EX31_RS22250 | | ATP-dependent protease ATP-binding subunit ClpX | 0.51 | 21 |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS13910 | | TetR/AcrR family transcriptional regulator | 0.74 | HER17_RS15845 | | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Dickeya dianthicola 67-19 | 0.48 | HGI48_RS10740 | | TetR/AcrR family transcriptional regulator | 0.74 | HGI48_RS05690 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 71 |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS10775 | | TetR/AcrR family transcriptional regulator | 0.74 | DDA3937_RS05645 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS06805 | | transcriptional regulator | 0.71 | HSERO_RS12910 | | ATP-dependent protease | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS18275 | | TetR/AcrR family transcriptional regulator | 0.79 | ABZR86_RS07325 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS01945 | | TetR/AcrR family transcriptional regulator | 0.72 | RALBFv3_RS01345 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS15255 | | TetR/AcrR family transcriptional regulator | 0.72 | UW163_RS14655 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.31 | CSW01_07060 | | TetR/AcrR family transcriptional regulator | 0.77 | CSW01_09610 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.1792.1 | | Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family | 0.78 | Xcc-8004.4047.1 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_010135 | | TetR/AcrR family transcriptional regulator | 0.69 | TX73_015350 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Ralstonia solanacearum GMI1000 | 0.28 | RS_RS21015 | | TetR/AcrR family transcriptional regulator | 0.72 | RS_RS08650 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.27 | RPSI07_RS03375 | | TetR/AcrR family transcriptional regulator | 0.72 | RPSI07_RS16130 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 81 |
| Magnetospirillum magneticum AMB-1 | 0.25 | AMB_RS21070 | | TetR family transcriptional regulator | 0.68 | AMB_RS14040 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas putida KT2440 | 0.22 | PP_1515 | | Transcriptional regulator, tetR family | 0.97 | PP_2301 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.22 | AO356_06140 | | TetR family transcriptional regulator | 0.98 | AO356_01745 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 104 |
| Pseudomonas sp. S08-1 | 0.22 | OH686_06750 | | Transcriptional regulator, AcrR family | 0.96 | OH686_03640 | | ATP-dependent Clp protease, ATP-binding subunit ClpX | low | > 80 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_04289 | | hypothetical protein | 0.68 | MPMX19_01547 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Shewanella sp. ANA-3 | 0.21 | Shewana3_1297 | | TetR family transcriptional regulator (RefSeq) | 0.76 | Shewana3_2660 | clpX | ATP-dependent protease ATP-binding subunit ClpX (RefSeq) | low | > 73 |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS08455 | | TetR/AcrR family transcriptional regulator | 0.70 | ABIE41_RS18055 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c31580 | | putative HTH-type transcriptional regulator, TetR family | 0.69 | PGA1_c12530 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 62 |
| Pseudomonas fluorescens FW300-N2E3 | 0.20 | AO353_16355 | | TetR family transcriptional regulator | 0.98 | AO353_20180 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Lysobacter sp. OAE881 | 0.20 | ABIE51_RS10665 | | TetR/AcrR family transcriptional regulator | 0.78 | ABIE51_RS14150 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 62 |
| Pseudomonas sp. RS175 | 0.20 | PFR28_00377 | | hypothetical protein | 0.98 | PFR28_01229 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Shewanella amazonensis SB2B | 0.19 | Sama_2341 | | TetR family transcriptional regulator (RefSeq) | 0.77 | Sama_1225 | clpX | ATP-dependent protease ATP-binding subunit ClpX (RefSeq) | 0.33 | 46 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_4732 | | Transcriptional regulator, TetR family | 0.98 | PfGW456L13_2553 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.19 | Pf1N1B4_3061 | | Transcriptional regulator, TetR family | 0.98 | Pf1N1B4_3946 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas stutzeri RCH2 | 0.19 | Psest_1564 | | Transcriptional regulator | 0.94 | Psest_2286 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.19 | DVU2819 | | transcriptional regulator, TetR family (TIGR) | 0.60 | DVU1336 | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR) | low | > 55 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_0106 | | transcriptional regulator, TetR family (RefSeq) | 0.66 | Dshi_1387 | | ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq) | low | > 64 |
| Shewanella loihica PV-4 | 0.19 | Shew_1313 | | TetR family transcriptional regulator (RefSeq) | 0.77 | Shew_2507 | clpX | ATP-dependent protease ATP-binding subunit (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS16840 | | TetR/AcrR family transcriptional regulator | 0.69 | ABIE40_RS07095 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Alteromonas macleodii MIT1002 | 0.18 | MIT1002_00424 | | Solvent efflux pump srpABC operon corepressor | 0.76 | MIT1002_02759 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 70 |
| Pseudomonas fluorescens FW300-N2E2 | 0.18 | Pf6N2E2_3093 | | Transcriptional regulator, TetR family | 0.98 | Pf6N2E2_2217 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.18 | PFLU_RS06175 | | TetR/AcrR family transcriptional regulator | 0.97 | PFLU_RS19165 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 109 |
| Pseudomonas simiae WCS417 | 0.18 | PS417_06105 | | TetR family transcriptional regulator | 0.97 | PS417_17230 | | Clp protease ATP-binding protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.18 | PFLU_RS06175 | | TetR/AcrR family transcriptional regulator | 0.97 | PFLU_RS19165 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 109 |
| Sphingomonas koreensis DSMZ 15582 | 0.17 | Ga0059261_3939 | | transcriptional regulator, TetR family | 0.69 | Ga0059261_0096 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | — | — |
| Agrobacterium fabrum C58 | 0.16 | Atu4477 | | TetR family transcriptional regulator | 0.70 | Atu1259 | | ATP-dependent Clp protease, ATP-binding subunit | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.15 | GFF5760 | | Transcriptional regulator, TetR family | 0.70 | GFF4043 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 90 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS14980 | | TetR/AcrR family transcriptional regulator | 0.69 | A4249_RS06475 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Acinetobacter radioresistens SK82 | 0.15 | MPMX26_01288 | | hypothetical protein | 0.69 | MPMX26_00409 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 36 |
| Sinorhizobium meliloti 1021 | 0.15 | SMc03169 | | transcriptional regulator | 0.70 | SMc01904 | | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.15 | ABZR88_RS09115 | | TetR/AcrR family transcriptional regulator | 0.52 | ABZR88_RS06965 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 71 |
| Caulobacter crescentus NA1000 | 0.13 | CCNA_00967 | | TetR-family transcriptional regulator | 0.68 | CCNA_02039 | | ATP-dependent endopeptidase clp, ATP-binding subunit ClpX | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.13 | CCNA_00967 | | TetR-family transcriptional regulator | 0.68 | CCNA_02039 | | ATP-dependent endopeptidase clp, ATP-binding subunit ClpX | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.13 | CA265_RS21330 | | TetR family transcriptional regulator | 0.51 | CA265_RS04275 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.12 | CA264_07370 | | TetR family transcriptional regulator | 0.50 | CA264_01405 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 74 |
Not shown: 0 genomes with orthologs for Psyr_3347 only; 51 genomes with orthologs for Psyr_1748 only