| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_2473 | | transcriptional regulator, LysR family | 1.0 | Psyr_1733 | | Peptidyl-prolyl cis-trans isomerase, cyclophilin type | 0.31 | 9 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_2473 | | transcriptional regulator, LysR family | 1.00 | Psyr_1733 | | Peptidyl-prolyl cis-trans isomerase, cyclophilin type | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2596 | | Transcriptional regulator, LysR family | 0.89 | PfGW456L13_2608 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_20375 | | LysR family transcriptional regulator | 0.90 | AO353_27825 | | peptidylprolyl isomerase | low | > 101 |
| Pseudomonas sp. RS175 | 0.90 | PFR28_01264 | | PCP degradation transcriptional activation protein | 0.94 | PFR28_02745 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_01560 | | LysR family transcriptional regulator | 0.94 | AO356_01015 | | peptidylprolyl isomerase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_3992 | | Transcriptional regulator, LysR family | 0.92 | Pf1N1B4_4004 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 87 |
| Pseudomonas sp. DMC3 | 0.89 | GFF1478 | | PCP degradation transcriptional activation protein | 0.89 | GFF1490 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_2187 | | Transcriptional regulator, LysR family | 0.95 | Pf6N2E2_151 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | — | — |
| Pseudomonas orientalis W4I3 | 0.89 | QF045_RS18675 | | LysR family transcriptional regulator | 0.91 | QF045_RS18610 | | peptidylprolyl isomerase | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.89 | GEMAOFIL_03707 | | PCP degradation transcriptional activation protein | 0.91 | GEMAOFIL_03695 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.89 | PFLU_RS18945 | | LysR family transcriptional regulator | 0.90 | PFLU_RS18885 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.89 | PFLU_RS18945 | | LysR family transcriptional regulator | 0.90 | PFLU_RS18885 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.89 | PS417_16995 | | LysR family transcriptional regulator | 0.89 | PS417_16900 | | peptidylprolyl isomerase | — | — |
| Pseudomonas aeruginosa PA14 | 0.87 | IKLFDK_12545 | | LysR family transcriptional regulator | 0.76 | IKLFDK_08675 | | peptidylprolyl isomerase | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.87 | DQ20_RS35770 | | LysR family transcriptional regulator | 0.76 | DQ20_RS54740 | | peptidylprolyl isomerase | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.87 | DY961_RS04870 | | LysR family transcriptional regulator | 0.76 | DY961_RS20660 | | peptidylprolyl isomerase | low | > 100 |
| Pseudomonas sp. SVBP6 | 0.87 | COO64_RS24425 | | LysR family transcriptional regulator | 0.79 | COO64_RS09965 | | peptidylprolyl isomerase | low | > 93 |
| Pseudomonas sp. BP01 | 0.84 | JOY50_RS04680 | | LysR family transcriptional regulator | 0.83 | JOY50_RS05930 | | peptidylprolyl isomerase | — | — |
| Pseudomonas putida KT2440 | 0.84 | PP_2436 | | Transcriptional regulator, LysR family | 0.78 | PP_2903 | | peptidyl-prolyl cis-trans isomerase B (rotamase B) | 0.30 | 28 |
| Pseudomonas segetis P6 | 0.84 | MPMX49_02374 | | PCP degradation transcriptional activation protein | 0.72 | MPMX49_02245 | | Peptidyl-prolyl cis-trans isomerase B | — | — |
| Pseudomonas sp. S08-1 | 0.83 | OH686_00880 | | Transcriptional regulator, LysR family | 0.73 | OH686_03750 | | Peptidyl-prolyl cis-trans isomerase PpiB | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.83 | Psest_2127 | | Transcriptional regulator | 0.73 | Psest_2304 | | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | low | > 67 |
| Paraburkholderia sabiae LMG 24235 | 0.48 | QEN71_RS21150 | | LysR family transcriptional regulator | 0.67 | QEN71_RS06115 | | peptidylprolyl isomerase | low | > 153 |
| Shewanella loihica PV-4 | 0.47 | Shew_2857 | | LysR family transcriptional regulator (RefSeq) | 0.57 | Shew_2512 | | peptidylprolyl isomerase (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_01758 | | HTH-type transcriptional regulator LeuO | 0.63 | MIT1002_02501 | | Peptidyl-prolyl cis-trans isomerase B | low | > 70 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS14695 | | LysR family transcriptional regulator | 0.66 | ABZR87_RS10630 | | peptidylprolyl isomerase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS05720 | | LysR family transcriptional regulator | 0.65 | RR42_RS06335 | | cyclophilin | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS14540 | | LysR family transcriptional regulator | 0.66 | RPSI07_RS18390 | | cyclophilin | — | — |
| Marinobacter adhaerens HP15 | 0.38 | HP15_820 | | transcriptional regulator, LysR family protein | 0.64 | HP15_2190 | | peptidyl-prolyl cis-trans isomerase B | low | > 73 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS10140 | | LysR family transcriptional regulator | 0.67 | RS_RS05800 | | cyclophilin | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS02770 | | LysR family transcriptional regulator | 0.66 | RALBFv3_RS14985 | | cyclophilin | low | > 76 |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS10955 | | LysR family transcriptional regulator | 0.66 | UW163_RS12455 | | cyclophilin | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF5483 | | LysR-family transcriptional regulator | 0.60 | GFF5146 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 90 |
| Acinetobacter baumannii LAC-4 | 0.33 | RR41_RS13485 | | LysR family transcriptional regulator | 0.64 | RR41_RS07135 | | peptidyl-prolyl cis-trans isomerase | low | > 55 |
| Rhizobium sp. OAE497 | 0.32 | ABIE40_RS05450 | | LysR family transcriptional regulator | 0.25 | ABIE40_RS09425 | | peptidylprolyl isomerase | low | > 107 |
| Herbaspirillum seropedicae SmR1 | 0.32 | HSERO_RS06735 | | LysR family transcriptional regulator | 0.63 | HSERO_RS09310 | | cyclophilin | — | — |
| Variovorax sp. SCN45 | 0.31 | GFF202 | | Transcriptional regulator, LysR family | 0.62 | GFF553 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 127 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS16385 | | LysR family transcriptional regulator | 0.63 | ABID97_RS17860 | | peptidylprolyl isomerase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_208 | | LysR-family transcriptional regulator | 0.57 | Ac3H11_41 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 79 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_01652 | | DNA-binding transcriptional regulator, LysR family | 0.66 | H281DRAFT_00543 | | peptidyl-prolyl cis-trans isomerase B (cyclophilin B) | low | > 103 |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_02320 | | HTH-type transcriptional regulator SyrM 1 | 0.62 | MPMX26_01727 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 36 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS10685 | | LysR family transcriptional regulator | 0.66 | BPHYT_RS12445 | | cyclophilin | — | — |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_004545 | | DNA-binding transcriptional LysR family regulator | 0.66 | ABIE53_002710 | | peptidyl-prolyl cis-trans isomerase B (cyclophilin B) | low | > 113 |
| Agrobacterium fabrum C58 | 0.27 | Atu5197 | | LysR family transcriptional regulator | 0.26 | Atu1679 | | peptidyl prolyl cis-trans isomerase | low | > 89 |
| Castellaniella sp019104865 MT123 | 0.26 | ABCV34_RS02860 | | LysR family transcriptional regulator | 0.67 | ABCV34_RS00375 | | peptidylprolyl isomerase | low | > 48 |
| Shewanella amazonensis SB2B | 0.25 | Sama_2520 | | putative transcriptional regulator (RefSeq) | 0.57 | Sama_1220 | | peptidyl-prolyl cis-trans isomerase B (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS21355 | | LysR family transcriptional regulator | 0.60 | DDA3937_RS15095 | | peptidylprolyl isomerase B | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.23 | CSW01_12575 | | transcriptional regulator LeuO | 0.59 | CSW01_09260 | | peptidylprolyl isomerase | low | > 62 |
| Escherichia coli ECRC99 | 0.22 | KEDOAH_17450 | leuO | transcriptional regulator LeuO | 0.64 | KEDOAH_20145 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC102 | 0.22 | NIAGMN_08555 | leuO | transcriptional regulator LeuO | 0.64 | NIAGMN_05880 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECOR27 | 0.22 | NOLOHH_03050 | leuO | transcriptional regulator LeuO | 0.64 | NOLOHH_00815 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC98 | 0.22 | JDDGAC_14300 | leuO | transcriptional regulator LeuO | 0.64 | JDDGAC_11475 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC100 | 0.22 | OKFHMN_10705 | leuO | transcriptional regulator LeuO | 0.64 | OKFHMN_07825 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC101 | 0.22 | MCAODC_01220 | leuO | transcriptional regulator LeuO | 0.64 | MCAODC_27045 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.22 | OHPLBJKB_03582 | | HTH-type transcriptional regulator LeuO | 0.64 | OHPLBJKB_03156 | | Peptidyl-prolyl cis-trans isomerase B | — | — |
| Escherichia coli ECRC62 | 0.22 | BNILDI_08560 | leuO | transcriptional regulator LeuO | 0.64 | BNILDI_22245 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli Nissle 1917 | 0.22 | ECOLIN_RS00410 | | transcriptional regulator LeuO | 0.64 | ECOLIN_RS03045 | | peptidylprolyl isomerase B | — | — |
| Escherichia coli BL21 | 0.22 | ECD_00078 | | global transcription factor | 0.64 | ECD_00475 | | peptidyl-prolyl cis-trans isomerase B (rotamase B) | — | — |
| Escherichia fergusonii Becca | 0.22 | EFB2_03970 | | HTH-type transcriptional regulator LeuO | 0.64 | EFB2_03536 | | Peptidyl-prolyl cis-trans isomerase B | — | — |
| Escherichia coli BW25113 | 0.22 | b0076 | leuO | probable transcriptional activator for leuABCD operon (VIMSS) | 0.64 | b0525 | ppiB | peptidyl-prolyl cis-trans isomerase B (rotamase B) (NCBI) | — | — |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_08685 | leuO | transcriptional regulator LeuO | 0.64 | HEPCGN_06465 | ppiB | peptidylprolyl isomerase B | — | — |
| Shewanella sp. ANA-3 | 0.22 | Shewana3_3949 | | LysR family transcriptional regulator (RefSeq) | 0.60 | Shewana3_2665 | | peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.22 | SO4556 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.60 | SO1790 | ppiB-1 | peptidyl-prolyl cis-trans isomerase B (NCBI ptt file) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.21 | GFF162 | | Probable transcriptional activator for leuABCD operon | 0.64 | GFF4441 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | — | — |
| Kangiella aquimarina DSM 16071 | 0.20 | B158DRAFT_1234 | | Transcriptional regulator | 0.62 | B158DRAFT_1021 | | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | low | > 40 |
| Erwinia amylovora T8 | 0.19 | OLJFJH_04645 | | LysR family transcriptional regulator | 0.63 | OLJFJH_17620 | | peptidylprolyl isomerase B | — | — |
Not shown: 7 genomes with orthologs for Psyr_2473 only; 19 genomes with orthologs for Psyr_1733 only