| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_2154 | | transcriptional regulator, LacI family | 1.0 | Psyr_0648 | | transporter, putative | 0.48 | 1 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_2154 | | transcriptional regulator, LacI family | 1.00 | Psyr_0648 | | transporter, putative | 0.58 | 4 |
| Pseudomonas fluorescens SBW25-INTG | 0.78 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.28 | PFLU_RS18220 | | bile acid:sodium symporter | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.78 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.28 | PFLU_RS18220 | | bile acid:sodium symporter | low | > 109 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_18390 | | LacI family transcriptional regulator | 0.27 | PS417_16190 | | bile acid:sodium symporter | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.77 | AO353_20830 | | LacI family transcriptional regulator | 0.74 | AO353_13885 | | bile acid:sodium symporter | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.76 | Pf6N2E2_164 | | Ribose operon repressor | 0.70 | Pf6N2E2_3491 | | Sodium/bile acid symporter family | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_6032 | | Ribose operon repressor | 0.75 | Pf1N1B4_1269 | | Sodium/bile acid symporter family | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.75 | AO356_00955 | | LacI family transcriptional regulator | 0.68 | AO356_08085 | | bile acid:sodium symporter | low | > 104 |
| Pseudomonas sp. RS175 | 0.75 | PFR28_02734 | | Ribose operon repressor | 0.71 | PFR28_05240 | | hypothetical protein | low | > 88 |
| Pseudomonas putida KT2440 | 0.72 | PP_2457 | | DNA-binding transcriptional repressor | 0.29 | PP_2877 | | putative osmotic pressure-regulated transporter | low | > 96 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS07355 | | LacI family DNA-binding transcriptional regulator | 0.31 | QEN71_RS00995 | | bile acid:sodium symporter family protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS11205 | | LacI family transcription regulator | 0.29 | BPHYT_RS02065 | | membrane protein | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_05228 | | transcriptional regulator, LacI family | 0.31 | H281DRAFT_02114 | | solute carrier family 10 (sodium/bile acid cotransporter), member 7 | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_002322 | | LacI family transcriptional regulator | 0.31 | ABIE53_000558 | | sodium/bile acid cotransporter 7 | low | > 113 |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS09955 | | LacI family DNA-binding transcriptional regulator | 0.43 | ABZR87_RS00755 | | bile acid:sodium symporter family protein | low | > 80 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS11705 | | LacI family transcriptional regulator | 0.40 | UW163_RS08520 | | bile acid:sodium symporter | — | — |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS05020 | | LacI family transcriptional regulator | 0.42 | RS_RS12725 | | bile acid:sodium symporter | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS14240 | | LacI family transcriptional regulator | 0.40 | RALBFv3_RS05105 | | bile acid:sodium symporter | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS19225 | | LacI family transcriptional regulator | 0.41 | RPSI07_RS12190 | | bile acid:sodium symporter | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS11495 | | LacI family transcription regulator | 0.35 | HSERO_RS13635 | | membrane protein | low | > 78 |
| Variovorax sp. SCN45 | 0.40 | GFF2137 | | Ribose operon repressor | 0.32 | GFF6063 | | Sodium/bile acid symporter family | low | > 127 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS12620 | | HTH-type transcriptional repressor PurR | 0.31 | DDA3937_RS10620 | | bile acid:sodium symporter | low | > 74 |
| Dickeya dianthicola ME23 | 0.38 | DZA65_RS13140 | | HTH-type transcriptional repressor PurR | 0.31 | DZA65_RS11100 | | bile acid:sodium symporter | low | > 75 |
| Dickeya dianthicola 67-19 | 0.38 | HGI48_RS12685 | | HTH-type transcriptional repressor PurR | 0.31 | HGI48_RS10620 | | bile acid:sodium symporter | low | > 71 |
| Rahnella sp. WP5 | 0.38 | EX31_RS13830 | | HTH-type transcriptional repressor PurR | 0.33 | EX31_RS06855 | | bile acid:sodium symporter | low | > 89 |
| Pantoea sp. MT58 | 0.38 | IAI47_10795 | | HTH-type transcriptional repressor PurR | 0.28 | IAI47_05465 | | bile acid:sodium symporter | low | > 76 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS16510 | | transcriptional repressor PurR | 0.30 | BWI76_RS20615 | | sodium symporter | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.38 | LU632_RS11190 | purR | HTH-type transcriptional repressor PurR | 0.27 | LU632_RS06655 | | bile acid:sodium symporter | low | > 74 |
| Serratia liquefaciens MT49 | 0.38 | IAI46_25050 | | ribose operon transcriptional repressor RbsR | 0.31 | IAI46_11535 | | bile acid:sodium symporter | low | > 86 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS09245 | | HTH-type transcriptional repressor PurR | 0.30 | ECOLIN_RS13845 | | bile acid:sodium symporter family protein | — | — |
| Escherichia fergusonii Becca | 0.37 | EFB2_02334 | | HTH-type transcriptional repressor PurR | 0.30 | EFB2_01467 | | hypothetical protein | low | > 86 |
| Escherichia coli BW25113 | 0.37 | b1658 | purR | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | 0.30 | b2410 | yfeH | predicted inner membrane protein (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.37 | BNILDI_16695 | purR | HTH-type transcriptional repressor PurR | 0.30 | BNILDI_12770 | yfeH | Putative symporter YfeH | low | > 75 |
| Escherichia coli ECRC100 | 0.37 | OKFHMN_27385 | purR | HTH-type transcriptional repressor PurR | 0.30 | OKFHMN_22225 | yfeH | Putative symporter YfeH | low | > 80 |
| Escherichia coli ECRC99 | 0.37 | KEDOAH_00725 | purR | HTH-type transcriptional repressor PurR | 0.30 | KEDOAH_05995 | yfeH | Putative symporter YfeH | — | — |
| Escherichia coli ECRC102 | 0.37 | NIAGMN_00680 | purR | HTH-type transcriptional repressor PurR | 0.30 | NIAGMN_19995 | yfeH | Putative symporter YfeH | — | — |
| Escherichia coli BL21 | 0.37 | ECD_01629 | | transcriptional repressor, hypoxanthine-binding | 0.30 | ECD_02309 | | putative inorganic ion transporter | low | > 61 |
| Escherichia coli ECRC101 | 0.37 | MCAODC_18025 | purR | HTH-type transcriptional repressor PurR | 0.30 | MCAODC_12755 | yfeH | Putative symporter YfeH | low | > 87 |
| Pectobacterium carotovorum WPP14 | 0.37 | HER17_RS21525 | | ribose operon transcriptional repressor RbsR | 0.32 | HER17_RS10785 | | bile acid:sodium symporter | low | > 75 |
| Escherichia coli ECRC98 | 0.37 | JDDGAC_01975 | purR | HTH-type transcriptional repressor PurR | 0.30 | JDDGAC_26175 | yfeH | Putative symporter YfeH | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.37 | OHPLBJKB_02066 | | HTH-type transcriptional repressor PurR | 0.30 | OHPLBJKB_01314 | | hypothetical protein | low | > 73 |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_05770 | purR | HTH-type transcriptional repressor PurR | 0.31 | HEPCGN_21405 | yfeH | Putative symporter YfeH | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.37 | GFF3618 | | Purine nucleotide synthesis repressor | 0.30 | GFF2039 | | Putative cytochrome oxidase | low | > 78 |
| Escherichia coli ECOR27 | 0.37 | NOLOHH_17905 | purR | HTH-type transcriptional repressor PurR | 0.30 | NOLOHH_13905 | yfeH | Putative symporter YfeH | low | > 75 |
| Enterobacter sp. TBS_079 | 0.36 | MPMX20_01978 | | HTH-type transcriptional repressor PurR | 0.30 | MPMX20_03303 | | hypothetical protein | low | > 85 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_1655 | | Transcriptional regulators | 0.30 | EX28DRAFT_0219 | | Predicted Na+-dependent transporter | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.31 | SM_b20674 | | LacI family transcriptional regulator | 0.32 | SMc04030 | | hypothetical protein | low | > 103 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.31 | Echvi_3495 | | Transcriptional regulators | 0.33 | Echvi_3715 | | Predicted Na+-dependent transporter | low | > 79 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS01690 | | LacI family DNA-binding transcriptional regulator | 0.29 | ABZR86_RS17040 | | bile acid:sodium symporter family protein | low | > 74 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_02768 | | Ribose operon repressor | 0.32 | MPMX19_03934 | | hypothetical protein | low | > 112 |
| Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS08670 | | LacI family transcriptional regulator | 0.29 | LRK54_RS07065 | | bile acid:sodium symporter | low | > 59 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.27 | Xcc-8004.2362.1 | | Transcriptional regulator, LacI family | 0.33 | Xcc-8004.4834.1 | | Sodium - Bile acid symporter | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS08435 | | LacI family DNA-binding transcriptional regulator | 0.29 | LRK55_RS06805 | | bile acid:sodium symporter family protein | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_15435 | | LacI family transcriptional regulator | 0.28 | OKGIIK_16570 | | Bile acid:sodium symporter | low | > 52 |
| Caulobacter crescentus NA1000 Δfur | 0.25 | CCNA_03161 | | transcriptional regulator xylR | 0.34 | CCNA_01729 | | transporter, sodium/bile acid symporter family | low | > 67 |
| Caulobacter crescentus NA1000 | 0.25 | CCNA_03161 | | transcriptional regulator xylR | 0.34 | CCNA_01729 | | transporter, sodium/bile acid symporter family | low | > 66 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS16645 | | LacI family DNA-binding transcriptional regulator | 0.33 | ABIE40_RS16305 | | bile acid:sodium symporter family protein | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.24 | A4249_RS03600 | | LacI family DNA-binding transcriptional regulator | 0.33 | A4249_RS15185 | | bile acid:sodium symporter | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_1890 | | transcriptional regulator, LacI family | 0.32 | Ga0059261_2930 | | Predicted Na+-dependent transporter | low | > 68 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.24 | GFF1544 | | Transcriptional regulatory protein | 0.29 | GFF18 | | Sodium/bile acid symporter family | low | > 90 |
| Cupriavidus basilensis FW507-4G11 | 0.22 | RR42_RS34650 | | LacI family transcriptional regulator | 0.42 | RR42_RS03420 | | bile acid:sodium symporter | low | > 128 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.21 | CA264_13975 | | LacI family transcriptional regulator | 0.29 | CA264_01530 | | hypothetical protein | low | > 74 |
Not shown: 22 genomes with orthologs for Psyr_2154 only; 7 genomes with orthologs for Psyr_0648 only