| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens GW456-L13 | 1.0 | PfGW456L13_4168 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 1.0 | PfGW456L13_1861 | | Queuosine Biosynthesis QueE Radical SAM | 0.33 | 16 |
| Pseudomonas fluorescens FW300-N1B4 | 0.96 | Pf1N1B4_3777 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.98 | Pf1N1B4_629 | | Queuosine Biosynthesis QueE Radical SAM | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_02265 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.94 | AO353_03540 | | 7-carboxy-7-deazaguanine synthase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.93 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.96 | PFLU_RS24045 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.93 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.96 | PFLU_RS24045 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.93 | Pf6N2E2_5819 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.95 | Pf6N2E2_5545 | | Queuosine Biosynthesis QueE Radical SAM | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_19525 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.96 | AO356_18065 | | 7-carboxy-7-deazaguanine synthase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.92 | PS417_19330 | | SAM-dependent methyltransferase | 0.94 | PS417_22405 | | 7-carboxy-7-deazaguanine synthase | — | — |
| Pseudomonas sp. RS175 | 0.92 | PFR28_03129 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.97 | PFR28_03404 | | 7-carboxy-7-deazaguanine synthase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.88 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | 0.90 | Psyr_1418 | | Radical SAM | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.88 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | 0.90 | Psyr_1418 | | Radical SAM | — | — |
| Pseudomonas putida KT2440 | 0.86 | PP_1827 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.91 | PP_1225 | | 7-carboxy-7-deazaguanine synthase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_00665 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.82 | OH686_19175 | | 7-carboxy-7-deazaguanine synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_1995 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.82 | Psest_1505 | | Organic radical activating enzymes | low | > 67 |
| Shewanella loihica PV-4 | 0.57 | Shew_2417 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | 0.17 | Shew_2061 | | radical SAM domain-containing protein (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_10570 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.14 | CSW01_06870 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 62 |
| Shewanella amazonensis SB2B | 0.56 | Sama_2160 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | 0.15 | Sama_1825 | | radical activating enzyme (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.56 | SO3080 | | hemK family protein (NCBI ptt file) | 0.15 | SO2501 | | radical activating enzyme (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1468 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | 0.16 | Shewana3_2163 | | radical activating enzyme (RefSeq) | low | > 73 |
| Escherichia fergusonii Becca | 0.56 | EFB2_01528 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.16 | EFB2_01141 | | 7-carboxy-7-deazaguanine synthase | low | > 86 |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_21815 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | HEPCGN_19205 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 87 |
| Escherichia coli BW25113 | 0.55 | b2330 | yfcB | putative adenine-specific methylase (VIMSS) | 0.16 | b2777 | ygcF | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01375 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.16 | OHPLBJKB_00957 | | 7-carboxy-7-deazaguanine synthase | low | > 73 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_13650 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | MCAODC_10825 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 87 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_22610 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | OKFHMN_20300 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 80 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_05585 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | KEDOAH_07830 | queE | 7-carboxy-7-deazaguanine synthase QueE | — | — |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS13495 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | ECOLIN_RS15475 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 55 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_20385 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | NIAGMN_18070 | queE | 7-carboxy-7-deazaguanine synthase QueE | — | — |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_26570 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | JDDGAC_23965 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 86 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_13165 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.15 | BNILDI_10675 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 75 |
| Escherichia coli BL21 | 0.55 | ECD_02255 | | N5-glutamine methyltransferase | 0.16 | ECD_02622 | | 7-carboxy-7-deazaguanine synthase; queosine biosynthesis | low | > 61 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_14245 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.15 | NOLOHH_12170 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 75 |
| Pantoea sp. MT58 | 0.55 | IAI47_06145 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.17 | IAI47_04140 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 76 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS14585 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | DDA3937_RS16970 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 74 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS15470 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | DZA65_RS18110 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF1951 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.15 | GFF4831 | | Queuosine Biosynthesis QueE Radical SAM | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS07770 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.17 | LU632_RS06390 | queE | 7-carboxy-7-deazaguanine synthase QueE | low | > 74 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS14535 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | HGI48_RS17035 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS06930 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | HER17_RS04200 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 75 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_18030 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | IAI46_03675 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_1297 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase (EC 2.1.1.-) | 0.56 | B158DRAFT_1144 | | Organic radical activating enzymes | low | > 40 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_0274 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.16 | EX28DRAFT_2855 | | putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | low | > 76 |
| Rahnella sp. WP5 | 0.54 | EX31_RS19690 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.17 | EX31_RS07920 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 89 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_03265 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.16 | MPMX20_03645 | | 7-carboxy-7-deazaguanine synthase | low | > 85 |
| Erwinia amylovora T8 | 0.53 | OLJFJH_11150 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.17 | OLJFJH_09270 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 58 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS20440 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.16 | BWI76_RS22780 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_01228 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.16 | MIT1002_01264 | | 7-carboxy-7-deazaguanine synthase | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_01339 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.61 | MPMX26_02174 | | 7-carboxy-7-deazaguanine synthase | low | > 36 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS01515 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.57 | LRK55_RS04640 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS01735 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.57 | LRK54_RS04860 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_04795 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.58 | OKGIIK_01890 | | 7-carboxy-7-deazaguanine synthase | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS08050 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.60 | ABZR86_RS10790 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1953.1 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.64 | Xcc-8004.1449.1 | | Queuosine Biosynthesis QueE Radical SAM | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS06350 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.18 | QEN71_RS00205 | | 7-carboxy-7-deazaguanine synthase | low | > 153 |
| Dechlorosoma suillum PS | 0.44 | Dsui_2712 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.59 | Dsui_0476 | | organic radical activating enzyme | low | > 51 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS08215 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.66 | ABIE51_RS05100 | | 7-carboxy-7-deazaguanine synthase QueE | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_002520 | | ribosomal protein L3 glutamine methyltransferase | 0.19 | ABIE53_000397 | | 7-carboxy-7-deazaguanine synthase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00596 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | 0.19 | H281DRAFT_02231 | | 7-carboxy-7-deazaguanine synthase, Cx14CxxC type | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS12205 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.19 | BPHYT_RS01505 | | 7-cyano-7-deazaguanine reductase | low | > 109 |
Not shown: 16 genomes with orthologs for PfGW456L13_4168 only; 10 genomes with orthologs for PfGW456L13_1861 only