Conservation of cofitness between PP_4897 and PP_4922 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4897 N-acetylmuramoyl-L-alanine amidase 1.0 PP_4922 Phosphomethylpyrimidine synthase 0.27 8
Pseudomonas sp. RS175 0.81 PFR28_05118 N-acetylmuramoyl-L-alanine amidase AmiC 0.92 PFR28_05091 Phosphomethylpyrimidine synthase 0.27 47
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_08670 N-acetylmuramoyl-L-alanine amidase 0.92 AO356_08810 thiamine biosynthesis protein ThiC low > 104
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.92 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.92 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_157 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.92 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS02555 AMIN domain-containing protein 0.92 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC low > 109
Pseudomonas fluorescens SBW25 0.79 PFLU_RS02555 AMIN domain-containing protein 0.92 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC low > 109
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_1415 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.91 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) — —
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_3617 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.92 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 103
Pseudomonas simiae WCS417 0.78 PS417_02475 N-acetylmuramoyl-L-alanine amidase 0.91 PS417_02355 thiamine biosynthesis protein ThiC low > 88
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_13130 N-acetylmuramoyl-L-alanine amidase 0.92 AO353_13010 thiamine biosynthesis protein ThiC low > 101
Pseudomonas stutzeri RCH2 0.70 Psest_0680 N-acetylmuramoyl-L-alanine amidase 0.90 Psest_0477 thiamine biosynthesis protein ThiC — —
Pseudomonas sp. S08-1 0.69 OH686_09485 N-acetylmuramoyl-L-alanine amidase 0.91 OH686_15885 phosphomethylpyrimidine synthase 0.74 62
Marinobacter adhaerens HP15 0.48 HP15_2502 N-acetylmuramoyl-L-alanine amidase-like protein 0.83 HP15_453 thiamine biosynthesis protein thiC low > 73
Shewanella oneidensis MR-1 0.38 SO0600 amiB N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) 0.71 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.37 Shew_0563 N-acetylmuramoyl-L-alanine amidase (RefSeq) 0.74 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) — —
Shewanella amazonensis SB2B 0.37 Sama_3028 N-acetylmuramoyl-L-alanine amidase (RefSeq) 0.72 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) — —
Shewanella sp. ANA-3 0.37 Shewana3_0594 cell wall hydrolase/autolysin (RefSeq) 0.70 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) — —
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1949 N-acetylmuramoyl-L-alanine amidase 0.72 B158DRAFT_0295 hydroxymethylpyrimidine synthase low > 40
Alteromonas macleodii MIT1002 0.36 MIT1002_03791 N-acetylmuramoyl-L-alanine amidase AmiB precursor 0.71 MIT1002_00097 Phosphomethylpyrimidine synthase 0.84 39
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04210 N-acetylmuramoyl-L-alanine amidase 0.78 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC — —
Ralstonia solanacearum GMI1000 0.33 RS_RS12730 N-acetylmuramoyl-L-alanine amidase 0.74 RS_RS00555 phosphomethylpyrimidine synthase low > 80
Ralstonia solanacearum UW163 0.33 UW163_RS08515 N-acetylmuramoyl-L-alanine amidase 0.74 UW163_RS03640 phosphomethylpyrimidine synthase ThiC — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05110 N-acetylmuramoyl-L-alanine amidase 0.74 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC low > 76
Dechlorosoma suillum PS 0.33 Dsui_3500 N-acetylmuramoyl-L-alanine amidase 0.77 Dsui_0422 thiamine biosynthesis protein ThiC — —
Castellaniella sp019104865 MT123 0.32 ABCV34_RS08775 N-acetylmuramoyl-L-alanine amidase 0.75 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC — —
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS00765 N-acetylmuramoyl-L-alanine amidase 0.74 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC low > 80
Pectobacterium carotovorum WPP14 0.32 HER17_RS16500 N-acetylmuramoyl-L-alanine amidase AmiC 0.74 HER17_RS20380 phosphomethylpyrimidine synthase ThiC low > 75
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_03915 N-acetylmuramoyl-L-alanine amidase 0.76 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC — —
Dickeya dianthicola ME23 0.31 DZA65_RS19695 N-acetylmuramoyl-L-alanine amidase AmiB 0.72 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC low > 75
Dickeya dianthicola 67-19 0.31 HGI48_RS18560 N-acetylmuramoyl-L-alanine amidase AmiB 0.72 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC low > 71
Dickeya dadantii 3937 0.31 DDA3937_RS04995 N-acetylmuramoyl-L-alanine amidase 0.73 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC low > 74
Serratia liquefaciens MT49 0.31 IAI46_20390 N-acetylmuramoyl-L-alanine amidase 0.73 IAI46_01320 phosphomethylpyrimidine synthase ThiC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF1298 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.72 GFF4198 Thiamin biosynthesis protein ThiC low > 78
Pantoea sp. MT58 0.30 IAI47_02575 N-acetylmuramoyl-L-alanine amidase AmiB 0.73 IAI47_18085 phosphomethylpyrimidine synthase ThiC low > 76
Enterobacter sp. TBS_079 0.30 MPMX20_03680 N-acetylmuramoyl-L-alanine amidase AmiC 0.72 MPMX20_00217 Phosphomethylpyrimidine synthase low > 85
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2892 N-acetylmuramoyl-L-alanine amidase 0.72 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS15970 N-acetylmuramoyl-L-alanine amidase 0.77 BPHYT_RS13220 phosphomethylpyrimidine synthase — —
Escherichia fergusonii Becca 0.30 EFB2_01067 N-acetylmuramoyl-L-alanine amidase AmiC 0.72 EFB2_04617 Phosphomethylpyrimidine synthase low > 86
Escherichia coli BW25113 0.30 b2817 b2817 putative amidase (VIMSS) 0.72 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) low > 76
Escherichia coli ECRC101 0.30 MCAODC_10590 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC101 0.30 OKFHMN_20065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECOR27 0.30 NOLOHH_11950 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.70 4
Erwinia tracheiphila SCR3 0.30 LU632_RS06215 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC low > 74
Escherichia coli ECOR38 0.30 HEPCGN_19320 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00913 N-acetylmuramoyl-L-alanine amidase AmiC 0.72 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Escherichia coli ECRC62 0.30 BNILDI_10430 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC102 0.30 NIAGMN_17835 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC98 0.30 JDDGAC_23730 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC99 0.30 KEDOAH_08065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.72 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli BL21 0.30 ECD_02665 N-acetylmuramoyl-L-alanine amidase 0.72 ECD_03871 phosphomethylpyrimidine synthase low > 60
Escherichia coli Nissle 1917 0.30 ECOLIN_RS15815 N-acetylmuramoyl-L-alanine amidase AmiC 0.72 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC low > 52
Klebsiella michiganensis M5al 0.29 BWI76_RS23215 N-acetylmuramoyl-L-alanine amidase 0.71 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC low > 92
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF5476 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.68 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 90
Rahnella sp. WP5 0.28 EX31_RS08835 N-acetylmuramoyl-L-alanine amidase AmiB 0.73 EX31_RS16815 phosphomethylpyrimidine synthase ThiC low > 89
Xanthomonas campestris pv. campestris strain 8004 0.26 Xcc-8004.3058.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.74 Xcc-8004.1066.1 hypothetical protein low > 74
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_01952 N-acetylmuramoyl-L-alanine amidase 0.66 CCNA_02109 thiamine biosynthesis protein thiC — —
Caulobacter crescentus NA1000 0.17 CCNA_01952 N-acetylmuramoyl-L-alanine amidase 0.66 CCNA_02109 thiamine biosynthesis protein thiC — —
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS04090 N-acetylmuramoyl-L-alanine amidase 0.63 A4249_RS15715 phosphomethylpyrimidine synthase ThiC low > 48

Not shown: 3 genomes with orthologs for PP_4897 only; 34 genomes with orthologs for PP_4922 only