Conservation of cofitness between PP_4281 and PP_4710 in Pseudomonas putida KT2440

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4281 guanine deaminase 1.0 PP_4710 tRNA pseudouridine 55 synthase 0.25 11
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_3850 Guanine deaminase (EC 3.5.4.3) 0.89 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_4087 Guanine deaminase (EC 3.5.4.3) 0.88 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas simiae WCS417 0.84 PS417_20900 guanine deaminase 0.91 PS417_23960 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.84 PFLU_RS22515 guanine deaminase 0.90 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS22515 guanine deaminase 0.90 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_02575 guanine deaminase 0.88 AO356_07400 pseudouridine synthase low > 104
Pseudomonas sp. RS175 0.83 PFR28_01061 Guanine deaminase 0.89 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_00745 guanine deaminase 0.88 AO353_05550 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_2339 Guanine deaminase (EC 3.5.4.3) 0.88 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_1812 guanine deaminase 0.89 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_1812 guanine deaminase 0.89 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas stutzeri RCH2 0.75 Psest_1208 guanine deaminase 0.82 Psest_0983 tRNA pseudouridine 55 synthase — —
Acinetobacter radioresistens SK82 0.58 MPMX26_03062 Guanine deaminase 0.42 MPMX26_02778 tRNA pseudouridine synthase B low > 36
Dickeya dianthicola ME23 0.58 DZA65_RS12690 guanine deaminase 0.48 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS12240 guanine deaminase 0.49 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Dickeya dadantii 3937 0.57 DDA3937_RS12145 guanine deaminase 0.49 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Escherichia coli BL21 0.57 ECD_02716 guanine deaminase 0.49 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Escherichia coli ECRC102 0.57 NIAGMN_17395 guaD guanine deaminase 0.49 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC100 0.57 OKFHMN_19625 guaD guanine deaminase 0.49 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC101 0.57 MCAODC_10150 guaD guanine deaminase 0.49 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB low > 87
Escherichia coli ECRC99 0.57 KEDOAH_08510 guaD guanine deaminase 0.49 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC98 0.57 JDDGAC_23270 guaD guanine deaminase 0.49 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB low > 86
Escherichia coli ECOR38 0.57 HEPCGN_18915 guaD guanine deaminase 0.49 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.54 77
Escherichia coli ECOR27 0.57 NOLOHH_11555 guaD guanine deaminase 0.49 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli BW25113 0.57 b2883 guaD guanine deaminase (NCBI) 0.49 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Escherichia coli ECRC62 0.57 BNILDI_10080 guaD guanine deaminase 0.49 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia fergusonii Becca 0.56 EFB2_01018 Guanine deaminase 0.49 EFB2_00657 tRNA pseudouridine synthase B 0.29 60
Escherichia coli Nissle 1917 0.56 ECOLIN_RS16065 guanine deaminase 0.49 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00832 Guanine deaminase 0.49 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Caulobacter crescentus NA1000 0.56 CCNA_02699 guanine deaminase 0.32 CCNA_00035 tRNA pseudouridine synthase B — —
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_02699 guanine deaminase 0.32 CCNA_00035 tRNA pseudouridine synthase B low > 67
Lysobacter sp. OAE881 0.55 ABIE51_RS09675 guanine deaminase 0.41 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.38 35
Klebsiella michiganensis M5al 0.55 BWI76_RS10520 guanine deaminase 0.48 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Serratia liquefaciens MT49 0.53 IAI46_11780 guanine deaminase 0.50 IAI46_01945 tRNA pseudouridine(55) synthase TruB low > 86
Pantoea sp. MT58 0.53 IAI47_09810 guanine deaminase 0.48 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Enterobacter asburiae PDN3 0.53 EX28DRAFT_1948 guanine deaminase (EC 3.5.4.3) 0.48 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Enterobacter sp. TBS_079 0.53 MPMX20_01658 Guanine deaminase 0.48 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Bosea sp. OAE506 0.53 ABIE41_RS21745 guanine deaminase 0.33 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB low > 77
Sinorhizobium meliloti 1021 0.51 SM_b21293 guanine deaminase 0.33 SMc00321 tRNA pseudouridine synthase B low > 103
Rahnella sp. WP5 0.51 EX31_RS07035 guanine deaminase 0.47 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS16335 guanine deaminase 0.47 HSERO_RS17985 tRNA pseudouridine synthase B low > 78
Paraburkholderia graminis OAS925 0.51 ABIE53_003192 guanine deaminase 0.46 ABIE53_001832 tRNA pseudouridine55 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_03965 guanine deaminase 0.46 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Rhizobium sp. OAE497 0.51 ABIE40_RS25220 guanine deaminase 0.32 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB low > 107
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS03900 guanine deaminase 0.47 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB low > 153
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS15100 guanine deaminase 0.48 BPHYT_RS08080 tRNA pseudouridine synthase B low > 109
Ralstonia solanacearum PSI07 0.48 RPSI07_RS14150 guanine deaminase 0.43 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS05320 guanine deaminase 0.44 RR42_RS12835 tRNA pseudouridine synthase B low > 128
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS15060 guanine deaminase 0.43 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum GMI1000 0.47 RS_RS10530 guanine deaminase 0.43 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Azospirillum sp. SherDot2 0.47 MPMX19_05617 Guanine deaminase 0.35 MPMX19_02524 tRNA pseudouridine synthase B low > 112
Ralstonia solanacearum UW163 0.46 UW163_RS10565 guanine deaminase 0.43 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS03160 guanine deaminase 0.43 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Agrobacterium fabrum C58 0.46 Atu2315 guanine deaminase 0.34 Atu0085 tRNA pseudouridine 55 synthase low > 89
Alteromonas macleodii MIT1002 0.45 MIT1002_01570 Guanine deaminase 0.40 MIT1002_01773 tRNA pseudouridine synthase B low > 70
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1117 Guanine deaminase (EC 3.5.4.3) 0.39 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 79
Phaeobacter inhibens DSM 17395 0.43 PGA1_c21840 guanine deaminase GuaD 0.33 PGA1_c32950 tRNA pseudouridine synthase B low > 62
Dinoroseobacter shibae DFL-12 0.42 Dshi_2771 Guanine deaminase (RefSeq) 0.34 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) low > 64
Variovorax sp. OAS795 0.40 ABID97_RS22045 guanine deaminase 0.42 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB low > 91
Variovorax sp. SCN45 0.40 GFF1914 Guanine deaminase (EC 3.5.4.3) 0.40 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 127

Not shown: 3 genomes with orthologs for PP_4281 only; 22 genomes with orthologs for PP_4710 only