| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 1.0 | PP_4265 | | DNA-binding transcriptional dual regulator | 0.54 | 3 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_23875 | | molecular chaperone DnaK | 0.94 | PS417_20785 | | transcriptional regulator | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.93 | PfGW456L13_4071 | | Fumarate and nitrate reduction regulatory protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.77 | AO356_16095 | | molecular chaperone DnaK | 0.93 | AO356_02485 | | transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.94 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.94 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 109 |
| Pseudomonas sp. RS175 | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.94 | PFR28_01079 | | Transcriptional activator protein Anr | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.93 | Pf1N1B4_3867 | | Fumarate and nitrate reduction regulatory protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_14420 | | molecular chaperone DnaK | 0.93 | AO353_00660 | | transcriptional regulator | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.91 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.91 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | — | — |
| Pseudomonas sp. S08-1 | 0.71 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.89 | OH686_02245 | | Fumarate and nitrate reduction regulatory protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.87 | Psest_2538 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | 0.93 | Pf6N2E2_2323 | | Fumarate and nitrate reduction regulatory protein | low | > 103 |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.53 | HER17_RS10525 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 75 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.52 | IAI46_13260 | | FNR family transcription factor | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.65 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.53 | B158DRAFT_1982 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | low | > 40 |
| Escherichia fergusonii Becca | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.53 | EFB2_02593 | | Fumarate and nitrate reduction regulatory protein | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.53 | OHPLBJKB_02348 | | Fumarate and nitrate reduction regulatory protein | low | > 73 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.54 | EX28DRAFT_1540 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | — | — |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.53 | HEPCGN_25925 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 85 |
| Escherichia coli ECRC101 | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.53 | MCAODC_16030 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.53 | NIAGMN_26410 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.54 | GFF2656 | | Fumarate and nitrate reduction regulatory protein | low | > 78 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.53 | DDA3937_RS10950 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECRC101 | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.53 | OKFHMN_02240 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.53 | NOLOHH_19940 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli BW25113 | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.53 | b1334 | fnr | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.54 | JDDGAC_04785 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.53 | ECOLIN_RS08005 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECRC62 | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.53 | BNILDI_18090 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.53 | KEDOAH_26530 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.53 | MPMX20_02035 | | Fumarate and nitrate reduction regulatory protein | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.53 | LU632_RS11420 | | FNR family transcription factor | — | — |
| Rahnella sp. WP5 | 0.64 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.52 | EX31_RS07200 | | FNR family transcription factor | low | > 89 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.53 | DZA65_RS11360 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Dickeya dianthicola 67-19 | 0.64 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.53 | HGI48_RS10900 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.53 | CSW01_07190 | | transcriptional regulator FNR | low | > 62 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS05015 | | transcriptional regulator | 0.53 | BWI76_RS16185 | | transcriptional regulator FNR | — | — |
| Shewanella loihica PV-4 | 0.63 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.54 | Shew_1993 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | — | — |
| Pantoea sp. MT58 | 0.63 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.53 | IAI47_09580 | | FNR family transcription factor | low | > 76 |
| Shewanella amazonensis SB2B | 0.63 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.53 | Sama_1799 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.54 | Shewana3_2115 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.60 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.54 | SO2356 | etrA | electron transport regulator a (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.60 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.48 | HP15_634 | | transcriptional regulator, Crp/Fnr family | — | — |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_03690 | | DnaK suppressor protein | 0.49 | MIT1002_02137 | | Fumarate and nitrate reduction regulatory protein | low | > 70 |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS11245 | | molecular chaperone DnaK | 0.27 | AZOBR_RS01145 | | Crp/Fnr family transcriptional regulator | — | — |
| Dinoroseobacter shibae DFL-12 | 0.36 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.18 | Dshi_0660 | | transcriptional regulator, Crp/Fnr family (RefSeq) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.11 | A4249_RS13080 | | Crp/Fnr family transcriptional regulator | low | > 48 |
| Rhodopseudomonas palustris CGA009 | 0.36 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.20 | TX73_021940 | | helix-turn-helix domain-containing protein | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | 0.28 | MPMX19_00212 | | Nitrogen fixation regulation protein FixK | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.35 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.20 | PGA1_c30140 | | transcriptional activator protein FnrL | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS01030 | | molecular chaperone DnaK | 0.42 | RR42_RS12875 | | transcriptional regulator | — | — |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS00840 | | molecular chaperone DnaK | 0.43 | HSERO_RS16020 | | transcriptional regulator | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.20 | ABIE41_RS15480 | | helix-turn-helix domain-containing protein | low | > 77 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.38 | ABCV34_RS06835 | | helix-turn-helix domain-containing protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | 0.39 | QEN71_RS36970 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.15 | Ga0059261_1530 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | low | > 68 |
Not shown: 14 genomes with orthologs for PP_4693 only; 11 genomes with orthologs for PP_4265 only