Conservation of cofitness between PP_0366 and PP_3417 in Pseudomonas putida KT2440

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0366 dethiobiotin synthetase 1.0 PP_3417 D-gluconate transporter 0.49 10
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.74 PfGW456L13_1927 Gluconate permease low > 87
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.74 Pf1N1B4_556 Gluconate permease low > 87
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14155 dethiobiotin synthetase 0.75 AO356_05055 permease DsdX low > 104
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27630 dethiobiotin synthase 0.77 PFLU_RS23585 GntP family permease 0.67 8
Pseudomonas sp. RS175 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.75 PFR28_00595 High-affinity gluconate transporter — —
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.75 Pf6N2E2_2863 Gluconate permease low > 103
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27630 dethiobiotin synthase 0.77 PFLU_RS23585 GntP family permease 0.38 28
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_07505 dethiobiotin synthetase 0.75 AO353_03245 permease DsdX low > 101
Pseudomonas simiae WCS417 0.76 PS417_25985 dethiobiotin synthetase 0.77 PS417_21980 permease DsdX 0.19 65
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_4683 dethiobiotin synthase 0.83 Psyr_3338 gluconate permease GntT low > 86
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_4683 dethiobiotin synthase 0.83 Psyr_3338 gluconate permease GntT low > 86
Shewanella loihica PV-4 0.53 Shew_1722 dethiobiotin synthase (RefSeq) 0.23 Shew_2533 gluconate transporter (RefSeq) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.21 Shewana3_2684 gluconate transporter (RefSeq) — —
Shewanella oneidensis MR-1 0.51 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.22 SO1771 permease, GntP family (NCBI ptt file) — —
Pantoea sp. MT58 0.47 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD 0.45 IAI47_14085 gluconate transporter low > 76
Dickeya dianthicola 67-19 0.47 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.45 HGI48_RS19890 gluconate transporter low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.45 DZA65_RS20960 gluconate transporter low > 75
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS12700 dethiobiotin synthase 0.47 ABZR86_RS12640 gluconate:H+ symporter low > 74
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2213 dethiobiotin synthase 0.45 EX28DRAFT_4127 gluconate transporter low > 76
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_05660 dethiobiotin synthase 0.25 CSW01_01470 permease low > 62
Enterobacter sp. TBS_079 0.45 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 0.46 MPMX20_04302 High-affinity gluconate transporter low > 85
Dickeya dadantii 3937 0.45 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.44 DDA3937_RS19775 gluconate transporter low > 74
Serratia liquefaciens MT49 0.45 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.44 IAI46_23960 gluconate transporter low > 86
Klebsiella michiganensis M5al 0.44 BWI76_RS08775 dethiobiotin synthase 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) low > 92
Escherichia fergusonii Becca 0.44 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 0.44 EFB2_00413 High-affinity gluconate transporter low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS04145 dethiobiotin synthase 0.44 ECOLIN_RS19505 gluconate transporter — —
Escherichia coli BL21 0.44 ECD_00745 dethiobiotin synthetase 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system low > 60
Escherichia coli ECRC98 0.44 JDDGAC_10020 bioD dethiobiotin synthase 0.44 JDDGAC_20615 gntT gluconate transporter — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 0.44 OHPLBJKB_00288 High-affinity gluconate transporter low > 73
Escherichia coli ECRC101 0.44 MCAODC_25600 bioD dethiobiotin synthase 0.44 MCAODC_07515 gntT gluconate transporter — —
Escherichia coli ECRC99 0.44 KEDOAH_21525 bioD dethiobiotin synthase 0.44 KEDOAH_11155 gntT gluconate transporter — —
Escherichia coli BW25113 0.44 b0778 bioD dethiobiotin synthetase (NCBI) 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) low > 76
Escherichia coli ECOR27 0.44 NOLOHH_22755 bioD dethiobiotin synthase 0.44 NOLOHH_08770 gntT gluconate transporter low > 57
Escherichia coli ECRC101 0.44 OKFHMN_06385 bioD dethiobiotin synthase 0.44 OKFHMN_16985 gntT gluconate transporter — —
Escherichia coli ECRC102 0.44 NIAGMN_04430 bioD dethiobiotin synthase 0.44 NIAGMN_14755 gntT gluconate transporter — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS13445 dethiobiotin synthase 0.28 HER17_RS00545 GntP family transporter low > 75
Escherichia coli ECOR38 0.43 HEPCGN_01655 bioD dethiobiotin synthase 0.44 HEPCGN_15795 gntT gluconate transporter low > 85
Escherichia coli ECRC62 0.43 BNILDI_21025 bioD dethiobiotin synthase 0.44 BNILDI_02745 gntT gluconate transporter — —
Erwinia tracheiphila SCR3 0.43 LU632_RS09145 bioD dethiobiotin synthase 0.35 LU632_RS19170 gntU gluconate transporter — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) 0.44 GFF602 High-affinity gluconate transporter GntT low > 78
Rahnella sp. WP5 0.41 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.42 EX31_RS05050 gluconate transporter low > 89
Alteromonas macleodii MIT1002 0.40 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.38 MIT1002_03473 5-keto-D-gluconate transporter low > 70
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS12255 dethiobiotin synthetase 0.72 HSERO_RS05470 permease low > 78
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02155 dithiobiotin synthetase 0.53 BPHYT_RS13375 permease — —
Variovorax sp. SCN45 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.44 GFF1885 Gluconate transporter family protein low > 127
Ralstonia solanacearum UW163 0.35 UW163_RS14160 dethiobiotin synthase 0.52 UW163_RS20965 permease — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00825 dethiobiotin synthase 0.52 RALBFv3_RS18165 permease — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) 0.28 Ac3H11_3740 Gluconate permease low > 79
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02096 dethiobiotin synthetase 0.52 H281DRAFT_04276 gluconate permease GntT low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_000578 dethiobiotin synthetase 0.52 ABIE53_003515 GntP family gluconate:H+ symporter low > 113
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS12345 dethiobiotin synthase 0.53 ABZR87_RS19095 gluconate:H+ symporter low > 80
Ralstonia solanacearum PSI07 0.33 RPSI07_RS16695 dethiobiotin synthase 0.53 RPSI07_RS05470 permease low > 81
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS01090 dethiobiotin synthase 0.53 QEN71_RS26910 GntP family permease — —
Ralstonia solanacearum GMI1000 0.32 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD 0.53 RS_RS22870 permease — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS00935 dethiobiotin synthetase 0.56 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) — —
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS09760 dethiobiotin synthase 0.38 CA265_RS01125 gluconate permease low > 88

Not shown: 26 genomes with orthologs for PP_0366 only; 4 genomes with orthologs for PP_3417 only