Conservation of cofitness between PP_2337 and PP_2302 in Pseudomonas putida KT2440

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2337 aconitate isomerase 1.0 PP_2302 DNA-binding, ATP-dependent protease 0.35 5
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_4115 2-methylaconitate cis-trans isomerase 0.94 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I low > 87
Cupriavidus basilensis FW507-4G11 0.85 RR42_RS11275 3-methylitaconate isomerase 0.67 RR42_RS09030 DNA-binding protein — —
Pseudomonas simiae WCS417 0.84 PS417_21065 3-methylitaconate isomerase 0.94 PS417_17225 DNA-binding protein — —
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_00885 3-methylitaconate isomerase 0.94 AO353_20185 DNA-binding protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_3822 2-methylaconitate cis-trans isomerase 0.94 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Pseudomonas fluorescens SBW25 0.84 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF 0.94 PFLU_RS19160 endopeptidase La 0.62 13
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF 0.94 PFLU_RS19160 endopeptidase La low > 109
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_6064 2-methylaconitate isomerase 0.94 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Ralstonia solanacearum PSI07 0.83 RPSI07_RS00385 2-methylaconitate cis-trans isomerase PrpF 0.68 RPSI07_RS16135 endopeptidase La — —
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_20880 3-methylitaconate isomerase 0.94 AO356_01740 DNA-binding protein low > 104
Ralstonia solanacearum GMI1000 0.83 RS_RS17725 2-methylaconitate cis-trans isomerase PrpF 0.67 RS_RS08655 endopeptidase La — —
Lysobacter sp. OAE881 0.83 ABIE51_RS09485 2-methylaconitate cis-trans isomerase PrpF 0.67 ABIE51_RS14145 endopeptidase La — —
Ralstonia sp. UNC404CL21Col 0.83 ABZR87_RS16730 2-methylaconitate cis-trans isomerase PrpF 0.68 ABZR87_RS12785 endopeptidase La low > 80
Pseudomonas sp. RS175 0.82 PFR28_02924 2-methyl-aconitate isomerase 0.94 PFR28_01230 Lon protease low > 88
Pseudomonas sp. S08-1 0.82 OH686_01675 probable AcnD-accessory protein PrpF 0.88 OH686_03635 endopeptidase La — —
Paraburkholderia sabiae LMG 24235 0.82 QEN71_RS31055 2-methylaconitate cis-trans isomerase PrpF 0.67 QEN71_RS21975 endopeptidase La low > 153
Shewanella sp. ANA-3 0.81 Shewana3_3828 methylitaconate delta2-delta3-isomerase (RefSeq) 0.68 Shewana3_2659 Lon-A peptidase (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.81 Xcc-8004.3976.1 2-methylaconitate cis-trans isomerase 0.66 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 0.53 41
Burkholderia phytofirmans PsJN 0.81 BPHYT_RS30140 3-methylitaconate isomerase 0.67 BPHYT_RS09460 peptidase — —
Dyella japonica UNC79MFTsu3.2 0.81 ABZR86_RS08430 2-methylaconitate cis-trans isomerase PrpF 0.67 ABZR86_RS07320 endopeptidase La low > 74
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS22835 2-methylaconitate cis-trans isomerase PrpF 0.67 RALBFv3_RS01340 endopeptidase La — —
Shewanella oneidensis MR-1 0.81 SO0342 conserved hypothetical protein (NCBI ptt file) 0.68 SO1796 lon ATP-dependent protease La (NCBI ptt file) low > 76
Ralstonia solanacearum UW163 0.81 UW163_RS23455 2-methylaconitate cis-trans isomerase PrpF 0.67 UW163_RS14650 endopeptidase La — —
Paraburkholderia graminis OAS925 0.81 ABIE53_005044 putative AcnD-accessory protein PrpF 0.65 ABIE53_002117 ATP-dependent Lon protease low > 113
Pseudomonas stutzeri RCH2 0.80 Psest_2318 probable AcnD-accessory protein PrpF 0.90 Psest_2285 ATP-dependent protease La — —
Variovorax sp. SCN45 0.80 GFF269 2-methylaconitate isomerase 0.64 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I low > 127
Paraburkholderia bryophila 376MFSha3.1 0.80 H281DRAFT_02982 2-methylaconitate cis-trans isomerase 0.67 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 — —
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_2088 2-methylaconitate cis-trans isomerase 0.93 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_2088 2-methylaconitate cis-trans isomerase 0.93 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 low > 86
Herbaspirillum seropedicae SmR1 0.78 HSERO_RS11420 3-methylitaconate isomerase 0.67 HSERO_RS12905 peptidase — —
Acinetobacter radioresistens SK82 0.78 MPMX26_00659 2-methyl-aconitate isomerase 0.55 MPMX26_02299 Lon protease low > 36
Acidovorax sp. GW101-3H11 0.76 Ac3H11_2325 2-methylaconitate cis-trans isomerase 0.66 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Marinobacter adhaerens HP15 0.76 HP15_1929 AcnD-accessory protein PrpF 0.73 HP15_2183 DNA-binding ATP-dependent protease La — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_1346 2-methylaconitate cis-trans isomerase 0.65 B158DRAFT_1038 ATP-dependent protease La low > 40
Shewanella amazonensis SB2B 0.75 Sama_3297 hypothetical protein (RefSeq) 0.68 Sama_1226 endopeptidase La (RefSeq) low > 62
Azospirillum brasilense Sp245 0.75 AZOBR_RS24310 3-methylitaconate isomerase 0.63 AZOBR_RS07145 peptidase low > 97
Shewanella loihica PV-4 0.74 Shew_1823 putative AcnD-accessory protein PrpF (RefSeq) 0.69 Shew_2506 ATP-dependent protease La (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_06750 2-methylaconitate cis-trans isomerase PrpF 0.68 CSW01_09605 endopeptidase La low > 62
Alteromonas macleodii MIT1002 0.72 MIT1002_03132 3-methylitaconate isomerase 0.67 MIT1002_02757 Lon protease — —
Variovorax sp. OAS795 0.59 ABID97_RS19020 2-methylaconitate cis-trans isomerase PrpF 0.66 ABID97_RS17590 endopeptidase La low > 91

Not shown: 0 genomes with orthologs for PP_2337 only; 57 genomes with orthologs for PP_2302 only