Conservation of cofitness between PP_0951 and PP_1860 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0951 Ribosome hibernation promoting factor 1.0 PP_1860 Organic hydroperoxide resistance transcriptional regulator 0.45 18
Pseudomonas simiae WCS417 0.83 PS417_04340 ribosome hibernation promoting factor HPF 0.73 PS417_08495 MarR family transcriptional regulator — —
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH 0.75 PfGW456L13_2237 Organic hydroperoxide resistance transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH 0.76 Pf6N2E2_2458 Organic hydroperoxide resistance transcriptional regulator — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_07040 hypothetical protein 0.76 AO356_03145 MarR family transcriptional regulator — —
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH 0.76 Pf1N1B4_275 Organic hydroperoxide resistance transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05185 hypothetical protein 0.80 AO353_19090 MarR family transcriptional regulator low > 101
Pseudomonas sp. RS175 0.80 PFR28_00172 Ribosome hibernation promoting factor 0.75 PFR28_00973 Organic hydroperoxide resistance transcriptional regulator — —
Pseudomonas sp. S08-1 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf 0.68 OH686_17660 Organic hydroperoxide resistance transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.72 Psyr_3626 transcriptional regulator, MarR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.72 Psyr_3626 transcriptional regulator, MarR family low > 86
Pseudomonas fluorescens SBW25 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.76 PFLU_RS08445 MarR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.76 PFLU_RS08445 MarR family transcriptional regulator low > 109
Marinobacter adhaerens HP15 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA 0.52 HP15_2792 transcriptional regulator MarR family protein low > 73
Alteromonas macleodii MIT1002 0.60 MIT1002_00826 Ribosome hibernation promoting factor 0.33 MIT1002_00888 Organic hydroperoxide resistance transcriptional regulator low > 70
Shewanella amazonensis SB2B 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) 0.45 Sama_0628 MarR family transcriptional regulator (RefSeq) low > 62
Shewanella sp. ANA-3 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) 0.43 Shewana3_3311 MarR family transcriptional regulator (RefSeq) low > 73
Rahnella sp. WP5 0.58 EX31_RS12395 ribosome hibernation promoting factor 0.47 EX31_RS05595 MarR family transcriptional regulator 0.66 47
Pectobacterium carotovorum WPP14 0.56 HER17_RS20065 ribosome hibernation promoting factor 0.52 HER17_RS06400 MarR family transcriptional regulator low > 75
Serratia liquefaciens MT49 0.55 IAI46_22475 ribosome hibernation promoting factor 0.47 IAI46_00420 MarR family transcriptional regulator low > 86
Erwinia tracheiphila SCR3 0.53 LU632_RS21285 hpf ribosome hibernation promoting factor 0.47 LU632_RS00235 MarR family transcriptional regulator low > 74
Pantoea sp. MT58 0.53 IAI47_17190 ribosome hibernation promoting factor 0.46 IAI47_18675 MarR family transcriptional regulator low > 76
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3257 ribosomal subunit interface protein 0.46 EX28DRAFT_3564 Transcriptional regulators low > 76
Dechlorosoma suillum PS 0.52 Dsui_0703 ribosomal subunit interface protein 0.50 Dsui_2172 transcriptional regulator low > 51
Enterobacter sp. TBS_079 0.51 MPMX20_04109 Ribosome hibernation promoting factor 0.50 MPMX20_00654 Organic hydroperoxide resistance transcriptional regulator low > 85
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12820 ribosome hibernation promoting factor 0.41 CSW01_19135 MarR family transcriptional regulator low > 62
Dickeya dadantii 3937 0.51 DDA3937_RS01525 ribosome hibernation promoting factor 0.50 DDA3937_RS18760 MarR family transcriptional regulator low > 74
Dickeya dianthicola ME23 0.51 DZA65_RS01505 ribosome hibernation promoting factor 0.51 DZA65_RS19880 MarR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS01440 ribosome hibernation promoting factor 0.51 HGI48_RS18745 MarR family transcriptional regulator low > 71
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS02080 ribosome hibernation promoting factor 0.48 RR42_RS22585 MarR family transcriptional regulator low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF2612 Ribosome hibernation protein YhbH 0.49 GFF354 Organic hydroperoxide resistance transcriptional regulator low > 90
Acidovorax sp. GW101-3H11 0.46 Ac3H11_681 Ribosome hibernation protein YhbH 0.53 Ac3H11_4655 Organic hydroperoxide resistance transcriptional regulator low > 79
Variovorax sp. SCN45 0.45 GFF7293 Ribosome hibernation promoting factor Hpf 0.46 GFF3570 Organic hydroperoxide resistance transcriptional regulator low > 127
Variovorax sp. OAS795 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA 0.47 ABID97_RS00925 MarR family transcriptional regulator low > 91
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22135 ribosomal subunit interface protein 0.49 RPSI07_RS05140 MarR family transcriptional regulator low > 81
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS11165 ribosomal subunit interface protein 0.48 RALBFv3_RS18415 MarR family transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.43 UW163_RS02415 ribosomal subunit interface protein 0.48 UW163_RS20715 MarR family transcriptional regulator — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA 0.47 ABCV34_RS12000 MarR family transcriptional regulator low > 48
Ralstonia solanacearum GMI1000 0.43 RS_RS02015 ribosomal subunit interface protein 0.48 RS_RS22455 MarR family transcriptional regulator low > 80
Lysobacter sp. OAE881 0.41 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA 0.49 ABIE51_RS14315 MarR family transcriptional regulator low > 62
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS02900 ribosome hibernation promoting factor 0.50 BPHYT_RS33655 MarR family transcriptional regulator low > 109
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA 0.45 ABZR87_RS03665 MarR family transcriptional regulator low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P 0.49 H281DRAFT_06031 transcriptional regulator, MarR family low > 103
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.47 QEN71_RS17840 MarR family transcriptional regulator low > 153
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS12870 ribosome-associated translation inhibitor RaiA 0.44 LRK54_RS15735 MarR family transcriptional regulator low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS12570 ribosome-associated translation inhibitor RaiA 0.44 LRK55_RS15485 MarR family transcriptional regulator low > 63
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.1661.1 Ribosome hibernation protein YhbH 0.49 Xcc-8004.339.1 Organic hydroperoxide resistance transcriptional regulator low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_0828 ribosomal subunit interface protein 0.42 Echvi_3340 Transcriptional regulators low > 79

Not shown: 27 genomes with orthologs for PP_0951 only; 14 genomes with orthologs for PP_1860 only