Conservation of cofitness between PP_3118 and PP_1318 in Pseudomonas putida KT2440

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3118 DNA linked enzyme involved in DNA repair 1.0 PP_1318 Cytochrome b 0.18 20
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2086 DNA polymerase-like protein PA0670 0.96 Pf6N2E2_5338 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) low > 103
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_22710 DNA repair nucleotidyltransferase 0.94 AO353_15250 cytochrome B low > 101
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21815 DNA repair nucleotidyltransferase 0.96 AO356_17070 cytochrome B low > 104
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_5680 DNA polymerase-like protein PA0670 0.95 Pf1N1B4_961 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) low > 87
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_2821 DNA polymerase-like protein PA0670 0.96 PfGW456L13_1635 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) low > 87
Pseudomonas sp. RS175 0.63 PFR28_01354 Protein ImuB 0.96 PFR28_03605 Cytochrome b — —
Pseudomonas simiae WCS417 0.62 PS417_15585 DNA repair nucleotidyltransferase 0.94 PS417_04160 cytochrome B — —
Pseudomonas stutzeri RCH2 0.61 Psest_1979 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.89 Psest_3278 Cytochrome b subunit of the bc complex — —
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.94 PFLU_RS04200 cytochrome bc complex cytochrome b subunit low > 109
Pseudomonas fluorescens SBW25 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.94 PFLU_RS04200 cytochrome bc complex cytochrome b subunit low > 109
Pseudomonas sp. S08-1 0.55 OH686_02405 DNA polymerase IV-like protein ImuB 0.93 OH686_08385 Ubiquinol-cytochrome C reductase, cytochrome B subunit — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS18205 DNA polymerase Y family protein 0.55 ABZR86_RS09875 cytochrome bc complex cytochrome b subunit low > 74
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3896.1 hypothetical protein 0.64 Xcc-8004.2229.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS11845 DNA polymerase Y family protein 0.64 ABIE51_RS15435 cytochrome bc complex cytochrome b subunit low > 62
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00240 DNA polymerase Y family protein 0.60 LRK54_RS13770 cytochrome bc complex cytochrome b subunit — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS18140 DNA polymerase Y family protein 0.60 LRK55_RS13485 cytochrome bc complex cytochrome b subunit low > 63
Marinobacter adhaerens HP15 0.25 HP15_1334 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.79 HP15_546 ubiquinol-cytochrome c reductase, cytochrome b — —
Paraburkholderia sabiae LMG 24235 0.17 QEN71_RS43590 DNA polymerase Y family protein 0.67 QEN71_RS27780 cytochrome bc complex cytochrome b subunit — —
Dechlorosoma suillum PS 0.17 Dsui_2266 nucleotidyltransferase/DNA polymerase involved in DNA repair 0.69 Dsui_1813 cytochrome b subunit of the bc complex — —
Paraburkholderia graminis OAS925 0.15 ABIE53_000205 protein ImuB 0.65 ABIE53_003684 ubiquinol-cytochrome c reductase cytochrome b subunit low > 113
Paraburkholderia bryophila 376MFSha3.1 0.15 H281DRAFT_04986 protein ImuB 0.67 H281DRAFT_05670 ubiquinol-cytochrome c reductase cytochrome b subunit — —
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS32800 nucleotidyltransferase 0.64 RR42_RS18820 cytochrome B low > 128
Ralstonia solanacearum GMI1000 0.14 RS_RS20935 DNA polymerase Y family protein 0.64 RS_RS14670 cytochrome b low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.13 GFF4008 DNA polymerase-like protein PA0670 0.64 GFF1294 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) low > 90
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS11285 DNA polymerase 0.66 HSERO_RS20240 cytochrome B low > 78
Dinoroseobacter shibae DFL-12 0.13 Dshi_3997 hypothetical protein (RefSeq) 0.41 Dshi_3277 Cytochrome b/b6 domain (RefSeq) — —
Ralstonia solanacearum PSI07 0.13 RPSI07_RS03295 DNA polymerase Y family protein 0.64 RPSI07_RS10510 cytochrome b low > 81
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS20565 DNA polymerase Y family protein 0.64 ABZR87_RS02380 cytochrome bc complex cytochrome b subunit low > 80
Sinorhizobium meliloti 1021 0.12 SMc03789 hypothetical protein 0.44 SMc00188 cytochrome B transmembrane protein low > 103
Alteromonas macleodii MIT1002 0.12 MIT1002_00041 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.65 MIT1002_00815 Cytochrome b/c1 low > 70
Bosea sp. OAE506 0.11 ABIE41_RS17350 DNA polymerase Y family protein 0.48 ABIE41_RS11195 cytochrome b/b6 — —
Ralstonia solanacearum UW163 0.11 UW163_RS19255 DNA polymerase Y family protein 0.66 UW163_RS06890 cytochrome b — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS19920 DNA polymerase Y family protein 0.66 RALBFv3_RS06725 cytochrome b low > 76
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_2477 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.46 Ga0059261_3220 Cytochrome b subunit of the bc complex low > 68
Variovorax sp. SCN45 0.11 GFF679 DNA polymerase-like protein PA0670 0.60 GFF6695 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) low > 127
Phaeobacter inhibens DSM 17395 0.10 PGA1_c00330 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.41 PGA1_c33990 cytochrome b — —
Caulobacter crescentus NA1000 Δfur 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.49 CCNA_00506 cytochrome b low > 67
Caulobacter crescentus NA1000 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.49 CCNA_00506 cytochrome b low > 66
Variovorax sp. OAS795 0.10 ABID97_RS19220 DNA polymerase Y family protein 0.60 ABID97_RS22980 cytochrome bc complex cytochrome b subunit low > 91
Azospirillum sp. SherDot2 0.09 MPMX19_00258 Protein ImuB 0.46 MPMX19_05013 Cytochrome b low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS05690 DNA polymerase Y family protein 0.45 A4249_RS02565 cytochrome b N-terminal domain-containing protein low > 48
Acidovorax sp. GW101-3H11 0.07 Ac3H11_4194 DNA polymerase-like protein PA0670 0.60 Ac3H11_4751 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) — —
Agrobacterium fabrum C58 0.07 Atu3229 hypothetical protein 0.43 Atu2238 ubiquinol-cytochrome c reductase cytochrome b subunit low > 89

Not shown: 6 genomes with orthologs for PP_3118 only; 12 genomes with orthologs for PP_1318 only