Conservation of cofitness between PP_1317 and PP_0951 in Pseudomonas putida KT2440

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1317 Ubiquinol-cytochrome c reductase iron-sulfur subunit 1.0 PP_0951 Ribosome hibernation promoting factor 0.50 7
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_15245 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.80 AO353_05185 hypothetical protein — —
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_962 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_17065 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.81 AO356_07040 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_5337 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas sp. RS175 0.86 PFR28_03606 Ubiquinol-cytochrome c reductase iron-sulfur subunit 0.80 PFR28_00172 Ribosome hibernation promoting factor — —
Pseudomonas sp. S08-1 0.86 OH686_08390 ubiquinol-cytochrome c reductase, iron-sulfur subunit 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf — —
Pseudomonas fluorescens SBW25 0.85 PFLU_RS04195 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS04195 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas simiae WCS417 0.85 PS417_04155 ubiquinol-cytochrome C reductase 0.83 PS417_04340 ribosome hibernation promoting factor HPF — —
Pseudomonas stutzeri RCH2 0.84 Psest_3279 ubiquinol-cytochrome c reductase, iron-sulfur subunit 0.66 Psest_3314 ribosomal subunit interface protein — —
Marinobacter adhaerens HP15 0.65 HP15_545 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA — —
Lysobacter sp. OAE881 0.60 ABIE51_RS15440 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.41 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS13765 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.39 LRK54_RS12870 ribosome-associated translation inhibitor RaiA — —
Rhodanobacter denitrificans MT42 0.57 LRK55_RS13480 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.39 LRK55_RS12570 ribosome-associated translation inhibitor RaiA — —
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.2228.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) 0.38 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Rhodanobacter sp. FW510-T8 0.56 OKGIIK_03005 petA ubiquinol-cytochrome c reductase iron-sulfur subunit 0.39 OKGIIK_02260 raiA ribosomal subunit interface protein — —
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_03045 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.51 CSW01_12820 ribosome hibernation promoting factor low > 62
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_2100 ubiquinol-cytochrome c reductase, iron-sulfur subunit 0.59 B158DRAFT_2079 ribosomal subunit interface protein — —
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS09880 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Shewanella amazonensis SB2B 0.53 Sama_3021 ubiquinol--cytochrome-c reductase (RefSeq) 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Dechlorosoma suillum PS 0.51 Dsui_1812 ubiquinol-cytochrome c reductase, iron-sulfur subunit 0.52 Dsui_0703 ribosomal subunit interface protein — —
Shewanella oneidensis MR-1 0.51 SO0608 petA ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI ptt file) 0.58 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.50 Shewana3_0601 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) — —
Variovorax sp. SCN45 0.50 GFF6694 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) 0.45 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Variovorax sp. OAS795 0.49 ABID97_RS22985 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Castellaniella sp019104865 MT123 0.48 ABCV34_RS12635 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA — —
Alteromonas macleodii MIT1002 0.47 MIT1002_00814 Ubiquinol-cytochrome c reductase iron-sulfur subunit 0.60 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS18825 ubiquinol-cytochrome C reductase 0.46 RR42_RS02080 ribosome hibernation promoting factor low > 128
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_05669 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P — —
Paraburkholderia graminis OAS925 0.44 ABIE53_003685 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.41 ABIE53_000717 putative sigma-54 modulation protein low > 113
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS27785 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS17630 ubiquinol-cytochrome C reductase 0.41 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF1295 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) 0.46 GFF2612 Ribosome hibernation protein YhbH — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS10505 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.44 RPSI07_RS22135 ribosomal subunit interface protein — —
Ralstonia solanacearum GMI1000 0.40 RS_RS14675 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.43 RS_RS02015 ribosomal subunit interface protein 0.88 8
Ralstonia solanacearum UW163 0.40 UW163_RS06885 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.43 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06730 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.43 RALBFv3_RS11165 ribosomal subunit interface protein — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS02385 ubiquinol-cytochrome c reductase iron-sulfur subunit 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80

Not shown: 16 genomes with orthologs for PP_1317 only; 35 genomes with orthologs for PP_0951 only