Conservation of cofitness between PP_2152 and PP_0396 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2152 glycerophosphoryl diester phosphodiesterase 1.0 PP_0396 conserved protein of unknown function 0.27 5
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_3920 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.89 Pf1N1B4_2522 FIG002076: hypothetical protein low > 87
Pseudomonas simiae WCS417 0.87 PS417_07655 glycerophosphodiester phosphodiesterase 0.89 PS417_25835 hypothetical protein 0.17 59
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_00385 glycerophosphodiester phosphodiesterase 0.89 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS07730 glycerophosphodiester phosphodiesterase 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS07730 glycerophosphodiester phosphodiesterase 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas sp. RS175 0.87 PFR28_01128 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.89 PFR28_04069 hypothetical protein 0.44 6
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1902 Glycerophosphoryl diester phosphodiesterase 0.89 Psyr_4632 Protein of unknown function DUF444 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1902 Glycerophosphoryl diester phosphodiesterase 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_2273 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.89 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 103
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_02245 glycerophosphodiester phosphodiesterase 0.89 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) 0.35 9
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_4023 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.89 PfGW456L13_1195 FIG002076: hypothetical protein low > 87
Pseudomonas stutzeri RCH2 0.81 Psest_1664 Glycerophosphoryl diester phosphodiesterase 0.86 Psest_3673 Uncharacterized conserved protein low > 67
Pseudomonas sp. S08-1 0.81 OH686_22010 Glycerophosphoryl diester phosphodiesterase 0.87 OH686_15015 UPF0229 protein YeaH low > 80
Marinobacter adhaerens HP15 0.38 HP15_2244 glycerophosphoryl diester phosphodiesterase 0.65 HP15_2934 protein YeaH low > 73
Pantoea sp. MT58 0.22 IAI47_01290 glycerophosphoryl diester phosphodiesterase 0.56 IAI47_08920 YeaH/YhbH family protein low > 76
Klebsiella michiganensis M5al 0.21 BWI76_RS26285 glycerophosphodiester phosphodiesterase 0.56 BWI76_RS11480 hypothetical protein low > 92
Variovorax sp. SCN45 0.21 GFF2533 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.46 GFF2934 FIG002076: hypothetical protein low > 127
Serratia liquefaciens MT49 0.21 IAI46_01010 glycerophosphodiester phosphodiesterase 0.56 IAI46_14380 YeaH/YhbH family protein low > 86
Pectobacterium carotovorum WPP14 0.21 HER17_RS00630 glycerophosphodiester phosphodiesterase 0.57 HER17_RS11155 YeaH/YhbH family protein low > 75
Paraburkholderia sabiae LMG 24235 0.20 QEN71_RS01340 glycerophosphodiester phosphodiesterase 0.54 QEN71_RS07380 YeaH/YhbH family protein low > 153
Enterobacter sp. TBS_079 0.20 MPMX20_04325 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.57 MPMX20_01839 hypothetical protein low > 85
Rahnella sp. WP5 0.20 EX31_RS14740 glycerophosphodiester phosphodiesterase 0.56 EX31_RS06255 YeaH/YhbH family protein low > 89
Enterobacter asburiae PDN3 0.20 EX28DRAFT_4281 Glycerophosphoryl diester phosphodiesterase 0.57 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS02485 membrane protein 0.54 BPHYT_RS11185 hypothetical protein 0.28 3
Escherichia coli BW25113 0.20 b3449 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase (NCBI) 0.56 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli ECRC102 0.19 NIAGMN_14560 ugpQ glycerophosphodiester phosphodiesterase 0.56 NIAGMN_01360 yeaH UPF0229 protein YeaH — —
Escherichia coli BL21 0.19 ECD_03298 glycerophosphodiester phosphodiesterase, cytosolic 0.56 ECD_01753 UPF0229 family protein — —
Escherichia coli ECRC99 0.19 KEDOAH_11350 ugpQ glycerophosphodiester phosphodiesterase 0.56 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC98 0.19 JDDGAC_20420 ugpQ glycerophosphodiester phosphodiesterase 0.56 JDDGAC_01280 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.19 OKFHMN_16790 ugpQ glycerophosphodiester phosphodiesterase 0.56 OKFHMN_26705 yeaH UPF0229 protein YeaH — —
Escherichia fergusonii Becca 0.19 EFB2_00373 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.56 EFB2_02210 hypothetical protein low > 86
Escherichia coli ECRC101 0.19 MCAODC_07320 ugpQ glycerophosphodiester phosphodiesterase 0.56 MCAODC_18705 yeaH UPF0229 protein YeaH — —
Acidovorax sp. GW101-3H11 0.19 Ac3H11_4784 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.49 Ac3H11_1146 FIG002076: hypothetical protein low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00254 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.56 OHPLBJKB_01948 hypothetical protein low > 73
Escherichia coli ECOR38 0.19 HEPCGN_15610 ugpQ glycerophosphodiester phosphodiesterase 0.56 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 85
Dickeya dianthicola ME23 0.19 DZA65_RS11295 glycerophosphoryl diester phosphodiesterase 0.54 DZA65_RS10725 YeaH/YhbH family protein — —
Dickeya dianthicola 67-19 0.19 HGI48_RS10830 glycerophosphoryl diester phosphodiesterase 0.54 HGI48_RS10250 YeaH/YhbH family protein — —
Escherichia coli ECRC62 0.19 BNILDI_02925 ugpQ glycerophosphodiester phosphodiesterase 0.56 BNILDI_16020 yeaH UPF0229 protein YeaH — —
Cupriavidus basilensis FW507-4G11 0.19 RR42_RS12950 membrane protein 0.52 RR42_RS36480 hypothetical protein low > 128
Escherichia coli Nissle 1917 0.18 ECOLIN_RS19725 glycerophosphodiester phosphodiesterase 0.56 ECOLIN_RS09945 YeaH/YhbH family protein low > 52
Dickeya dadantii 3937 0.18 DDA3937_RS10875 glycerophosphoryl diester phosphodiesterase 0.54 DDA3937_RS10240 YeaH/YhbH family protein — —
Escherichia coli ECOR27 0.18 NOLOHH_08580 ugpQ glycerophosphodiester phosphodiesterase 0.56 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Magnetospirillum magneticum AMB-1 0.18 AMB_RS02715 glycerophosphodiester phosphodiesterase 0.43 AMB_RS10890 hypothetical protein low > 64
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_02044 glycerophosphoryl diester phosphodiesterase 0.56 H281DRAFT_05233 hypothetical protein low > 103
Azospirillum brasilense Sp245 0.18 AZOBR_RS01355 glycerophosphoryl diester phosphodiesterase 0.39 AZOBR_RS12650 hypothetical protein low > 97
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF559 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.56 GFF3472 UPF0229 protein YeaH low > 78
Ralstonia sp. UNC404CL21Col 0.17 ABZR87_RS11105 glycerophosphodiester phosphodiesterase 0.50 ABZR87_RS14215 YeaH/YhbH family protein low > 80
Alteromonas macleodii MIT1002 0.17 MIT1002_00492 Glycerophosphoryl diester phosphodiesterase 0.59 MIT1002_01232 hypothetical protein low > 70
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_07810 glycerophosphoryl diester phosphodiesterase 0.57 CSW01_09385 hypothetical protein low > 62
Paraburkholderia graminis OAS925 0.17 ABIE53_000641 glycerophosphoryl diester phosphodiesterase 0.56 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) 0.33 8
Azospirillum sp. SherDot2 0.16 MPMX19_00062 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.42 MPMX19_02156 hypothetical protein low > 112
Shewanella amazonensis SB2B 0.16 Sama_3037 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.54 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 62
Sinorhizobium meliloti 1021 0.16 SMc03129 hypothetical protein 0.40 SMc01266 hypothetical protein low > 103
Variovorax sp. OAS795 0.16 ABID97_RS07210 glycerophosphodiester phosphodiesterase 0.45 ABID97_RS10265 YeaH/YhbH family protein low > 91
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_06415 glycerophosphodiester phosphodiesterase 0.39 CA264_07095 hypothetical protein low > 74
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS18050 glycerophosphodiester phosphodiesterase 0.53 HSERO_RS21695 hypothetical protein low > 78
Shewanella loihica PV-4 0.13 Shew_0554 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.55 Shew_1832 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.12 Shewana3_0585 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.52 Shewana3_1637 hypothetical protein (RefSeq) 0.49 27

Not shown: 16 genomes with orthologs for PP_2152 only; 4 genomes with orthologs for PP_0396 only