Conservation of cofitness between PFLU_RS02430 and PFLU_RS10765 in Pseudomonas fluorescens SBW25

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 1.0 PFLU_RS10765 UvrY/SirA/GacA family response regulator transcription factor 0.81 19
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 1.00 PFLU_RS10765 UvrY/SirA/GacA family response regulator transcription factor low > 109
Pseudomonas simiae WCS417 0.98 PS417_02355 thiamine biosynthesis protein ThiC 0.99 PS417_10720 chemotaxis protein CheY low > 88
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_0544 hydroxymethylpyrimidine synthase 0.93 Psyr_2897 regulatory protein, LuxR:Response regulator receiver low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_0544 hydroxymethylpyrimidine synthase 0.93 Psyr_2897 regulatory protein, LuxR:Response regulator receiver low > 86
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_13010 thiamine biosynthesis protein ThiC 0.87 AO353_21830 chemotaxis protein CheY low > 101
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.88 Pf6N2E2_2022 BarA-associated response regulator UvrY (= GacA = SirA) low > 103
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_08810 thiamine biosynthesis protein ThiC 0.88 AO356_00355 chemotaxis protein CheY low > 104
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.87 Pf1N1B4_5619 BarA-associated response regulator UvrY (= GacA = SirA) low > 87
Pseudomonas sp. RS175 0.94 PFR28_05091 Phosphomethylpyrimidine synthase 0.97 PFR28_01410 Response regulator GacA low > 88
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.88 PfGW456L13_2885 BarA-associated response regulator UvrY (= GacA = SirA) low > 87
Pseudomonas putida KT2440 0.91 PP_4922 Phosphomethylpyrimidine synthase 0.89 PP_4099 two-componenent system BarA/UvrY - regulatory subunit low > 96
Pseudomonas sp. S08-1 0.89 OH686_15885 phosphomethylpyrimidine synthase 0.86 OH686_00335 BarA-associated response regulator UvrY ( GacA SirA) low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_0477 thiamine biosynthesis protein ThiC 0.87 Psest_2260 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain low > 67
Marinobacter adhaerens HP15 0.80 HP15_453 thiamine biosynthesis protein thiC 0.66 HP15_1567 two component transcriptional regulator, LuxR family low > 73
Dyella japonica UNC79MFTsu3.2 0.75 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.41 ABZR86_RS02715 response regulator low > 74
Lysobacter sp. OAE881 0.74 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.45 ABIE51_RS11810 response regulator low > 62
Rhodanobacter sp. FW510-T8 0.74 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.44 OKGIIK_07415 DNA-binding response regulator low > 52
Acinetobacter radioresistens SK82 0.74 MPMX26_00180 Phosphomethylpyrimidine synthase 0.59 MPMX26_00164 Response regulator GacA low > 36
Pedobacter sp. GW460-11-11-14-LB5 0.73 CA265_RS20165 phosphomethylpyrimidine synthase ThiC 0.29 CA265_RS06400 DNA-binding response regulator low > 88
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.1066.1 hypothetical protein 0.43 Xcc-8004.2612.1 BarA-associated response regulator UvrY (= GacA = SirA) low > 74
Pectobacterium carotovorum WPP14 0.72 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.58 HER17_RS07710 UvrY/SirA/GacA family response regulator transcription factor low > 75
Dickeya dadantii 3937 0.72 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.59 DDA3937_RS13705 UvrY/SirA/GacA family response regulator transcription factor low > 74
Shewanella loihica PV-4 0.71 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.59 Shew_1824 response regulator (RefSeq) — —
Rahnella sp. WP5 0.71 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.61 EX31_RS24145 UvrY/SirA/GacA family response regulator transcription factor low > 89
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0295 hydroxymethylpyrimidine synthase 0.61 B158DRAFT_1272 two component transcriptional regulator, LuxR family low > 40
Escherichia fergusonii Becca 0.71 EFB2_04617 Phosphomethylpyrimidine synthase 0.59 EFB2_02032 Response regulator UvrY low > 86
Escherichia coli ECRC101 0.71 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.59 MCAODC_19570 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECOR27 0.71 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.59 NOLOHH_16440 uvrY UvrY/SirA/GacA family response regulator transcription factor low > 75
Escherichia coli ECRC99 0.71 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.59 KEDOAH_02270 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC62 0.71 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.59 BNILDI_15230 uvrY UvrY/SirA/GacA family response regulator transcription factor low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.59 OHPLBJKB_01815 Response regulator UvrY low > 73
Escherichia coli ECRC102 0.71 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.59 NIAGMN_02230 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli BW25113 0.71 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.59 b1914 uvrY response regulator (NCBI) low > 76
Escherichia coli Nissle 1917 0.71 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.59 ECOLIN_RS10900 UvrY/SirA/GacA family response regulator transcription factor — —
Escherichia coli ECRC100 0.71 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.59 OKFHMN_25820 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli ECRC98 0.71 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.59 JDDGAC_00410 uvrC excinuclease ABC subunit UvrC low > 86
Enterobacter asburiae PDN3 0.71 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.59 EX28DRAFT_0633 two component transcriptional regulator, LuxR family low > 76
Escherichia coli ECOR38 0.71 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.59 HEPCGN_04175 uvrC excinuclease ABC subunit UvrC low > 87
Shewanella amazonensis SB2B 0.71 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.59 Sama_1607 response regulator (RefSeq) low > 62
Pantoea sp. MT58 0.71 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.60 IAI47_12470 UvrY/SirA/GacA family response regulator transcription factor low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4198 Thiamin biosynthesis protein ThiC 0.58 GFF1699 BarA-associated response regulator UvrY (= GacA = SirA) low > 78
Enterobacter sp. TBS_079 0.70 MPMX20_00217 Phosphomethylpyrimidine synthase 0.59 MPMX20_02839 Response regulator UvrY low > 85
Dickeya dianthicola 67-19 0.70 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.59 HGI48_RS13800 UvrY/SirA/GacA family response regulator transcription factor low > 71
Serratia liquefaciens MT49 0.70 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.59 IAI46_09205 UvrY/SirA/GacA family response regulator transcription factor low > 86
Klebsiella michiganensis M5al 0.70 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.58 BWI76_RS18335 DNA-binding response regulator low > 92
Dickeya dianthicola ME23 0.70 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.59 DZA65_RS14290 UvrY/SirA/GacA family response regulator transcription factor low > 75
Erwinia tracheiphila SCR3 0.70 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.60 LU632_RS10190 uvrY UvrY/SirA/GacA family response regulator transcription factor — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_00335 phosphomethylpyrimidine synthase 0.66 CSW01_06135 two-component system response regulator UvrY — —
Shewanella oneidensis MR-1 0.69 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.61 SO1860 DNA-binding response regulator, LuxR family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.69 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.61 Shewana3_1608 response regulator (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.68 MIT1002_00097 Phosphomethylpyrimidine synthase 0.51 MIT1002_02154 Response regulator UvrY low > 70
Azospirillum brasilense Sp245 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.23 AZOBR_RS27860 regulator low > 97
Phaeobacter inhibens DSM 17395 0.64 PGA1_c09110 thiamine biosynthesis protein ThiC 0.31 PGA1_c20200 two-component signal transduction system, response regulator low > 62
Rhodopseudomonas palustris CGA009 0.64 TX73_018540 phosphomethylpyrimidine synthase ThiC 0.30 TX73_007655 response regulator transcription factor low > 86
Sinorhizobium meliloti 1021 0.63 SM_b20615 thiamine biosynthesis protein ThiC 0.30 SM_b21520 two-component response regulator protein low > 103
Azospirillum sp. SherDot2 0.63 MPMX19_00336 Phosphomethylpyrimidine synthase 0.25 MPMX19_03688 Response regulator UvrY low > 112

Not shown: 37 genomes with orthologs for PFLU_RS02430 only; 3 genomes with orthologs for PFLU_RS10765 only