| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS04350 | | metalloprotease PmbA | 1.0 | PFLU_RS06185 | | efflux RND transporter permease subunit | 0.74 | 5 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS04350 | | metalloprotease PmbA | 1.00 | PFLU_RS06185 | | efflux RND transporter permease subunit | low | > 109 |
| Pseudomonas simiae WCS417 | 0.98 | PS417_04295 | | peptidase PmbA | 0.98 | PS417_06115 | | multidrug transporter AcrB | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_07085 | | peptidase PmbA | 0.91 | AO356_06130 | | multidrug transporter AcrB | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.92 | Pf6N2E2_3091 | | RND efflux transporter | low | > 103 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_00163 | | Metalloprotease PmbA | 0.91 | PFR28_00379 | | Cobalt-zinc-cadmium resistance protein CzcA | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_05205 | | peptidase PmbA | 0.92 | AO353_16365 | | multidrug transporter AcrB | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.92 | PfGW456L13_4730 | | RND efflux transporter | 0.29 | 42 |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.92 | Pf1N1B4_3063 | | RND efflux transporter | low | > 87 |
| Pseudomonas putida KT2440 | 0.90 | PP_0942 | | regulatory protease | 0.87 | PP_1517 | | RND efflux transporter | low | > 96 |
| Pseudomonas sp. S08-1 | 0.81 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.83 | OH686_06740 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.77 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.82 | Psest_1566 | | Cation/multidrug efflux pump | low | > 67 |
| Shewanella amazonensis SB2B | 0.50 | Sama_0482 | | PmbA protein (RefSeq) | 0.28 | Sama_0675 | | AcrB/AcrD/AcrF family transporter (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.50 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.17 | SO3279 | | AcrB/AcrD/AcrF family protein (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.50 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.24 | Shew_0466 | | acriflavin resistance protein (RefSeq) | low | > 60 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS06805 | | metalloprotease PmbA | 0.72 | ABIE51_RS17595 | | efflux RND transporter permease subunit | low | > 62 |
| Dechlorosoma suillum PS | 0.48 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.58 | Dsui_0408 | | cation/multidrug efflux pump | low | > 51 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_12845 | | metalloprotease PmbA | 0.27 | CSW01_08410 | | AcrB/AcrD/AcrF family protein | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_00230 | | peptidase PmbA | 0.25 | MIT1002_01561 | | Swarming motility protein SwrC | low | > 70 |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS21700 | | metalloprotease PmbA | 0.52 | ABZR86_RS11125 | | efflux RND transporter permease subunit | low | > 74 |
| Variovorax sp. SCN45 | 0.46 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | GFF493 | | RND efflux system, inner membrane transporter | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS09265 | | peptidase C69 | 0.51 | HSERO_RS01325 | | cation/multidrug efflux protein | low | > 78 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.50 | ABID97_RS17615 | | efflux RND transporter permease subunit | low | > 91 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.52 | RALBFv3_RS01385 | | AcrB/AcrD/AcrF family protein | low | > 76 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS15845 | | metalloprotease PmbA | 0.52 | UW163_RS14695 | | AcrB/AcrD/AcrF family protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS09660 | | metalloprotease PmbA | 0.52 | ABZR87_RS13180 | | efflux RND transporter permease subunit | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.53 | H281DRAFT_05197 | | Multidrug efflux pump subunit AcrB | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04270 | | metalloprotease PmbA | 0.54 | QEN71_RS07190 | | efflux RND transporter permease subunit | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_003116 | | PmbA protein | 0.53 | ABIE53_002354 | | multidrug efflux pump | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14750 | | peptidase PMbA | 0.51 | RR42_RS07915 | | multidrug transporter AcrB | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14705 | | peptidase C69 | 0.52 | BPHYT_RS11375 | | acriflavin resistance protein | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.52 | RPSI07_RS16100 | | AcrB/AcrD/AcrF family protein | 0.55 | 5 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | Ac3H11_933 | | Probable transmembrane drug efflux protein | low | > 79 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS04700 | | metalloprotease PmbA | 0.52 | RS_RS08335 | | AcrB/AcrD/AcrF family protein | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.40 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | GFF4033 | | Probable transmembrane drug efflux protein | low | > 90 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01886 | | Metalloprotease PmbA | 0.51 | MPMX19_05260 | | Cobalt-zinc-cadmium resistance protein CzcA | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c33480 | | protein PmbA | 0.23 | PGA1_c24610 | | integral membrane protein, AcrB/AcrD/AcrF family | — | — |
| Sinorhizobium meliloti 1021 | 0.25 | SMc00897 | | PMBA protein | 0.44 | SM_b20345 | | efflux protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.44 | ABIE40_RS17045 | | efflux RND transporter permease subunit | low | > 107 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.19 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.23 | BT1694 | | transporter, AcrB/D/F family (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.23 | HMPREF1181_RS05555 | | efflux RND transporter permease subunit | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.24 | HMPREF1078_RS01920 | | efflux RND transporter permease subunit | low | > 61 |
Not shown: 45 genomes with orthologs for PFLU_RS04350 only; 6 genomes with orthologs for PFLU_RS06185 only