Conservation of cofitness between NOLOHH_11130 and NOLOHH_12740 in Escherichia coli ECOR27

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR27 1.0 NOLOHH_11130 yggR Uncharacterized protein YggR 1.0 NOLOHH_12740 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Escherichia coli ECRC62 1.00 BNILDI_09710 yggR Uncharacterized protein YggR 0.99 BNILDI_11300 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00766 putative protein YggR 0.99 OHPLBJKB_01071 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 73
Escherichia coli ECOR38 0.99 HEPCGN_18565 yggR Uncharacterized protein YggR 0.99 HEPCGN_20150 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC98 0.98 JDDGAC_22890 yggR Uncharacterized protein YggR 0.99 JDDGAC_24575 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 86
Escherichia coli ECRC102 0.98 NIAGMN_17025 yggR Uncharacterized protein YggR 0.99 NIAGMN_18680 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.98 KEDOAH_08880 yggR Uncharacterized protein YggR 0.99 KEDOAH_07225 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli ECRC100 0.98 OKFHMN_19260 yggR Uncharacterized protein YggR 0.99 OKFHMN_20915 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 80
Escherichia coli BL21 0.98 ECD_02780 putative PilT family AAA+ ATPase 0.99 ECD_02517 succinate-semialdehyde dehydrogenase I, NADP-dependent low > 61
Escherichia coli ECRC101 0.98 MCAODC_09780 yggR Uncharacterized protein YggR 0.99 MCAODC_11435 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli BW25113 0.98 b2950 yggR putative protein transport (VIMSS) 0.99 b2661 gabD succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) low > 76
Escherichia fergusonii Becca 0.98 EFB2_00952 putative protein YggR 0.99 EFB2_01269 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS16410 type IV pilus twitching motility protein PilT 0.99 ECOLIN_RS14840 NADP-dependent succinate-semialdehyde dehydrogenase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF3053 Twitching motility protein PilT 0.91 GFF1566 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 78
Enterobacter sp. TBS_079 0.74 MPMX20_03808 putative protein YggR 0.54 MPMX20_04145 Glutarate-semialdehyde dehydrogenase low > 85
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2988 pilus retraction protein PilT 0.56 EX28DRAFT_3290 succinate-semialdehyde dehydrogenase low > 76
Klebsiella michiganensis M5al 0.68 BWI76_RS24095 twitching motility protein PilT 0.90 BWI76_RS05620 NAD-dependent succinate-semialdehyde dehydrogenase low > 92
Dickeya dianthicola ME23 0.60 DZA65_RS18430 type IV pilus twitching motility protein PilT 0.66 DZA65_RS12400 NAD-dependent succinate-semialdehyde dehydrogenase low > 75
Dickeya dianthicola 67-19 0.60 HGI48_RS17340 type IV pilus twitching motility protein PilT 0.66 HGI48_RS11855 NAD-dependent succinate-semialdehyde dehydrogenase low > 71
Pantoea sp. MT58 0.60 IAI47_03600 type IV pilus twitching motility protein PilT 0.57 IAI47_07580 NAD-dependent succinate-semialdehyde dehydrogenase low > 76
Pectobacterium carotovorum WPP14 0.58 HER17_RS03815 type IV pilus twitching motility protein PilT 0.66 HER17_RS09885 NAD-dependent succinate-semialdehyde dehydrogenase low > 75
Rahnella sp. WP5 0.55 EX31_RS02680 type IV pilus twitching motility protein PilT 0.58 EX31_RS12300 NAD-dependent succinate-semialdehyde dehydrogenase low > 89
Serratia liquefaciens MT49 0.52 IAI46_21405 type IV pilus twitching motility protein PilT 0.67 IAI46_16465 NADP-dependent succinate-semialdehyde dehydrogenase low > 86
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_02460 type IV pili twitching motility protein PilT 0.57 CSW01_08760 NAD-dependent succinate-semialdehyde dehydrogenase low > 62
Dechlorosoma suillum PS 0.47 Dsui_0604 pilus retraction protein PilT 0.67 Dsui_0437 succinate-semialdehyde dehydrogenase low > 51
Shewanella amazonensis SB2B 0.47 Sama_2476 twitching motility protein (RefSeq) 0.69 Sama_2637 succinate-semialdehyde dehydrogenase (NAD(P)(+)) (RefSeq) low > 62
Shewanella sp. ANA-3 0.46 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) 0.71 Shewana3_3092 succinate semialdehyde dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.46 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.71 SO1275 gabD succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] (from data) low > 76
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0195 pilus retraction protein PilT 0.53 B158DRAFT_1604 succinate-semialdehyde dehydrogenase low > 40
Variovorax sp. OAS795 0.45 ABID97_RS00255 type IV pilus twitching motility protein PilT 0.64 ABID97_RS11235 NAD-dependent succinate-semialdehyde dehydrogenase low > 91
Shewanella loihica PV-4 0.45 Shew_1138 twitching motility protein (RefSeq) 0.59 Shew_3173 succinic semialdehyde dehydrogenase (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS01220 type IV pilus twitching motility protein PilT 0.66 ABZR87_RS05195 NAD-dependent succinate-semialdehyde dehydrogenase low > 80
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0478 pilus retraction ATPase PilT 0.81 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0478 pilus retraction ATPase PilT 0.81 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Acidovorax sp. GW101-3H11 0.45 Ac3H11_4473 Twitching motility protein PilT 0.66 Ac3H11_1480 Aldehyde dehydrogenase B (EC 1.2.1.22) low > 79
Variovorax sp. SCN45 0.45 GFF3743 Twitching motility protein PilT 0.66 GFF5612 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 127
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11730 type IV pili twitching motility protein PilT 0.66 RPSI07_RS23810 NAD-dependent succinate-semialdehyde dehydrogenase low > 81
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17350 twitching motility protein PilT 0.73 RR42_RS21760 succinate-semialdehyde dehydrogenase low > 128
Ralstonia solanacearum UW163 0.44 UW163_RS08055 type IV pili twitching motility protein PilT 0.67 UW163_RS04040 NAD-dependent succinate-semialdehyde dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05570 type IV pili twitching motility protein PilT 0.67 RALBFv3_RS09540 NAD-dependent succinate-semialdehyde dehydrogenase low > 76
Ralstonia solanacearum GMI1000 0.44 RS_RS13430 type IV pili twitching motility protein PilT 0.64 RS_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase low > 80
Acinetobacter radioresistens SK82 0.44 MPMX26_02405 Twitching mobility protein 0.63 MPMX26_01991 Glutarate-semialdehyde dehydrogenase low > 36
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2343 Twitching motility protein PilT 0.83 Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 87
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_08155 twitching motility protein PilT 0.83 AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) low > 101
Pseudomonas sp. S08-1 0.43 OH686_10970 Twitching motility protein PilT 0.83 OH686_11875 Succinate-semialdehyde dehydrogenase [NAD(P)+] — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_13430 twitching motility protein PilT 0.83 AO356_10720 succinate-semialdehyde dehydrogenase low > 104
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1012 Twitching motility protein PilT 0.84 PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data) low > 87
Pseudomonas fluorescens SBW25 0.43 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.83 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.83 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4602 Twitching motility protein PilT 0.83 Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 103
Pseudomonas simiae WCS417 0.43 PS417_26720 twitching motility protein PilT 0.82 PS417_00895 succinate-semialdehyde dehydrogenase low > 88
Pseudomonas stutzeri RCH2 0.43 Psest_0285 pilus retraction protein PilT 0.81 Psest_4237 succinate-semialdehyde dehydrogenase low > 67
Pseudomonas sp. RS175 0.43 PFR28_04241 Twitching mobility protein 0.83 PFR28_04755 Glutarate-semialdehyde dehydrogenase low > 88
Marinobacter adhaerens HP15 0.43 HP15_289 twitching motility protein PilT 0.63 HP15_2020 succinate-semialdehyde dehydrogenase I low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2721 Twitching motility protein PilT 0.63 GFF1556 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 90
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19000 twitching motility protein PilT 0.72 HSERO_RS05395 succinate-semialdehyde dehdyrogenase 0.20 33
Pseudomonas putida KT2440 0.38 PP_5093 twitching motility protein 0.84 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) low > 96
Rhodospirillum rubrum S1H 0.31 Rru_A0118 type II secretion system protein E (NCBI) 0.61 Rru_A0134 Succinic semialdehyde dehydrogenase (NCBI) low > 58

Not shown: 12 genomes with orthologs for NOLOHH_11130 only; 21 genomes with orthologs for NOLOHH_12740 only