Conservation of cofitness between LRK54_RS07245 and LRK54_RS06500 in Rhodanobacter denitrificans FW104-10B01

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodanobacter denitrificans FW104-10B01 1.0 LRK54_RS07245 transglycosylase SLT domain-containing protein 1.0 LRK54_RS06500 lytic murein transglycosylase B 0.51 17
Rhodanobacter denitrificans MT42 1.00 LRK55_RS06980 transglycosylase SLT domain-containing protein 1.00 LRK55_RS06245 lytic murein transglycosylase B low > 63
Rhodanobacter sp000427505 FW510-R12 0.84 LRK53_RS01145 transglycosylase SLT domain-containing protein 0.90 LRK53_RS17790 lytic murein transglycosylase B low > 60
Rhodanobacter sp. FW510-T8 0.78 OKGIIK_16395 Lytic transglycosylase 0.80 OKGIIK_00080 mltB lytic murein transglycosylase B low > 52
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS12745 transglycosylase SLT domain-containing protein 0.76 ABZR86_RS17480 lytic murein transglycosylase B low > 74
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.961.1 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.35 Xcc-8004.904.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) — —
Lysobacter sp. OAE881 0.30 ABIE51_RS19070 transglycosylase SLT domain-containing protein 0.42 ABIE51_RS03155 lytic murein transglycosylase B 0.72 26
Pseudomonas stutzeri RCH2 0.23 Psest_1844 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.41 Psest_0514 lytic murein transglycosylase B low > 67
Pseudomonas sp. S08-1 0.21 OH686_21900 Soluble lytic murein transglycosylase 0.39 OH686_09310 lytic murein transglycosylase B low > 80
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_2294 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.40 Pf6N2E2_4999 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.32 6
Pseudomonas aeruginosa PA14 0.21 IKLFDK_15365 lytic transglycosylase Slt 0.39 IKLFDK_20635 lytic murein transglycosylase B low > 101
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_00530 lytic transglycosylase 0.40 AO353_06465 lytic transglycosylase low > 101
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_4045 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.39 PfGW456L13_1362 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.43 51
Pseudomonas simiae WCS417 0.21 PS417_07550 lytic transglycosylase 0.41 PS417_24715 lytic transglycosylase low > 88
Pseudomonas fluorescens SBW25 0.21 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.40 PFLU_RS26645 lytic murein transglycosylase B low > 109
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.40 PFLU_RS26645 lytic murein transglycosylase B low > 109
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_02350 lytic transglycosylase 0.40 AO356_15320 lytic transglycosylase 0.29 11
Pseudomonas putida KT2440 0.20 PP_2130 putative Soluble lytic transglycosylase 0.41 PP_4805 membrane-bound lytic murein transglycosylase B low > 96
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.40 Pf1N1B4_2694 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.33 29
Pseudomonas sp. RS175 0.20 PFR28_01106 Soluble lytic murein transglycosylase 0.40 PFR28_03866 Membrane-bound lytic murein transglycosylase B low > 88
Pseudomonas sp. BP01 0.20 JOY50_RS25015 transglycosylase SLT domain-containing protein 0.43 JOY50_RS17710 mltB lytic murein transglycosylase B low > 84
Pseudomonas sp. DMC3 0.20 GFF1267 Soluble lytic murein transglycosylase 0.40 GFF3882 Membrane-bound lytic murein transglycosylase B low > 89
Pseudomonas sp. SVBP6 0.20 COO64_RS09370 transglycosylase SLT domain-containing protein 0.40 COO64_RS15600 mltB lytic murein transglycosylase B low > 93
Pseudomonas syringae pv. syringae B728a 0.20 Psyr_3295 SLT 0.40 Psyr_4363 membrane-bound lytic murein transglycosylase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.20 Psyr_3295 SLT 0.40 Psyr_4363 membrane-bound lytic murein transglycosylase B 0.37 75
Dechlorosoma suillum PS 0.18 Dsui_0683 soluble lytic murein transglycosylase-like protein 0.28 Dsui_1972 lytic murein transglycosylase B low > 51
Kangiella aquimarina DSM 16071 0.18 B158DRAFT_1444 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.34 B158DRAFT_0081 lytic murein transglycosylase B low > 40
Serratia liquefaciens MT49 0.18 IAI46_02985 murein transglycosylase 0.29 IAI46_18155 lytic murein transglycosylase B low > 86
Alteromonas macleodii MIT1002 0.18 MIT1002_00576 Soluble lytic murein transglycosylase precursor 0.18 MIT1002_02585 Membrane-bound lytic murein transglycosylase B precursor low > 70
Dickeya dianthicola 67-19 0.18 HGI48_RS18385 murein transglycosylase 0.26 HGI48_RS03780 lytic murein transglycosylase B low > 71
Dickeya dadantii 3937 0.17 DDA3937_RS18455 murein transglycosylase 0.27 DDA3937_RS03745 lytic murein transglycosylase B low > 74
Dickeya dianthicola ME23 0.17 DZA65_RS19525 murein transglycosylase 0.26 DZA65_RS03910 lytic murein transglycosylase B 0.58 8
Pectobacterium carotovorum WPP14 0.17 HER17_RS02750 murein transglycosylase 0.30 HER17_RS16185 lytic murein transglycosylase B low > 75
Shewanella sp. ANA-3 0.17 Shewana3_2236 lytic transglycosylase, catalytic (RefSeq) 0.35 Shewana3_0993 lytic murein transglycosylase B (RefSeq) low > 73
Pantoea sp. MT58 0.17 IAI47_16260 murein transglycosylase 0.28 IAI47_04275 lytic murein transglycosylase B 0.37 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.17 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.30 GFF4695 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) low > 78
Erwinia tracheiphila SCR3 0.17 LU632_RS02575 sltY murein transglycosylase 0.28 LU632_RS15745 mltB lytic murein transglycosylase B low > 74
Escherichia fergusonii Becca 0.17 EFB2_04052 Soluble lytic murein transglycosylase 0.30 EFB2_01223 Membrane-bound lytic murein transglycosylase B low > 86
Escherichia coli BW25113 0.17 b4392 slt soluble lytic murein transglycosylase (VIMSS) 0.30 b2701 mltB membrane-bound lytic murein transglycosylase B (NCBI) 0.40 7
Escherichia coli Nissle 1917 0.16 ECOLIN_RS25210 murein transglycosylase 0.30 ECOLIN_RS15070 lytic murein transglycosylase B — —
Enterobacter asburiae PDN3 0.16 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.30 EX28DRAFT_2790 lytic murein transglycosylase B low > 76
Shewanella oneidensis MR-1 0.16 SO2040 soluble lytic murein transglycosylase, putative (NCBI ptt file) 0.34 SO1166 membrane-bound lytic transglycosylase, putative (NCBI ptt file) low > 76
Escherichia coli BL21 0.16 ECD_04268 lytic murein transglycosylase, soluble 0.30 ECD_02551 membrane-bound lytic murein transglycosylase B 0.45 43
Vibrio cholerae E7946 ATCC 55056 0.16 CSW01_03655 murein transglycosylase 0.22 CSW01_09775 lytic murein transglycosylase low > 62
Klebsiella michiganensis M5al 0.16 BWI76_RS04185 murein transglycosylase 0.30 BWI76_RS22210 murein transglycosylase B 0.32 8
Shewanella loihica PV-4 0.16 Shew_2125 lytic transglycosylase, catalytic (RefSeq) 0.33 Shew_2937 lytic murein transglycosylase B (RefSeq) — —
Rahnella sp. WP5 0.16 EX31_RS03985 murein transglycosylase 0.30 EX31_RS07810 lytic murein transglycosylase B low > 89
Erwinia amylovora T8 0.15 OLJFJH_01535 murein transglycosylase 0.28 OLJFJH_09565 lytic murein transglycosylase B low > 58
Shewanella amazonensis SB2B 0.15 Sama_1895 soluble lytic murein transglycosylase, putative (RefSeq) 0.36 Sama_2590 lytic murein transglycosylase B (RefSeq) low > 62
Ralstonia solanacearum PSI07 0.15 RPSI07_RS23510 lytic transglycosylase 0.23 RPSI07_RS19640 lytic murein transglycosylase B 0.42 18
Ralstonia solanacearum GMI1000 0.14 RS_RS00445 lytic transglycosylase 0.23 RS_RS04565 lytic murein transglycosylase B low > 80
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS01405 lytic transglycosylase 0.26 RR42_RS04540 lytic transglycosylase 0.55 4
Acinetobacter radioresistens SK82 0.13 MPMX26_02666 Soluble lytic murein transglycosylase 0.27 MPMX26_02108 Membrane-bound lytic murein transglycosylase B low > 36

Not shown: 23 genomes with orthologs for LRK54_RS07245 only; 4 genomes with orthologs for LRK54_RS06500 only