Conservation of cofitness between JDDGAC_10395 and JDDGAC_23610 in Escherichia coli ECRC98

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_10395 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 1.0 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.69 9
Escherichia coli ECRC100 1.00 OKFHMN_06740 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 1.00 OKFHMN_19945 lysA diaminopimelate decarboxylase low > 80
Escherichia coli ECOR27 1.00 NOLOHH_23170 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.99 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 75
Escherichia coli BW25113 1.00 b0754 aroG 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) 0.99 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_21225 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.99 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02959 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive 0.99 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECRC102 1.00 NIAGMN_04790 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 1.00 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 1.00 MCAODC_25960 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 1.00 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli BL21 1.00 ECD_00707 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible 0.99 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 61
Escherichia coli ECRC62 0.99 BNILDI_21165 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.99 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Escherichia coli ECOR38 0.99 HEPCGN_01535 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.99 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04015 3-deoxy-7-phosphoheptulonate synthase AroG 0.99 ECOLIN_RS15930 diaminopimelate decarboxylase — —
Escherichia fergusonii Becca 0.99 EFB2_03352 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive 0.99 EFB2_01045 Diaminopimelate decarboxylase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.88 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_2241 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) 0.87 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Klebsiella michiganensis M5al 0.95 BWI76_RS08600 3-deoxy-7-phosphoheptulonate synthase 0.87 BWI76_RS23360 diaminopimelate decarboxylase low > 92
Enterobacter sp. TBS_079 0.94 MPMX20_01381 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive 0.89 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Rahnella sp. WP5 0.91 EX31_RS23545 3-deoxy-7-phosphoheptulonate synthase AroG 0.75 EX31_RS13275 diaminopimelate decarboxylase low > 89
Serratia liquefaciens MT49 0.91 IAI46_06405 3-deoxy-7-phosphoheptulonate synthase AroG 0.78 IAI46_20520 diaminopimelate decarboxylase low > 86
Dickeya dadantii 3937 0.90 DDA3937_RS06560 3-deoxy-7-phosphoheptulonate synthase AroG 0.75 DDA3937_RS17425 diaminopimelate decarboxylase low > 74
Dickeya dianthicola ME23 0.89 DZA65_RS06960 3-deoxy-7-phosphoheptulonate synthase AroG 0.74 DZA65_RS18550 diaminopimelate decarboxylase low > 75
Pectobacterium carotovorum WPP14 0.89 HER17_RS14805 3-deoxy-7-phosphoheptulonate synthase AroG 0.77 HER17_RS03710 diaminopimelate decarboxylase low > 75
Dickeya dianthicola 67-19 0.89 HGI48_RS06605 3-deoxy-7-phosphoheptulonate synthase AroG 0.74 HGI48_RS17485 diaminopimelate decarboxylase low > 71
Pantoea sp. MT58 0.89 IAI47_13605 3-deoxy-7-phosphoheptulonate synthase AroG 0.75 IAI47_03860 diaminopimelate decarboxylase low > 76
Erwinia tracheiphila SCR3 0.87 LU632_RS15925 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.75 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Shewanella sp. ANA-3 0.77 Shewana3_3528 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) 0.19 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) low > 73
Shewanella loihica PV-4 0.77 Shew_0851 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) 0.18 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.58 18
Shewanella oneidensis MR-1 0.76 SO0756 aroG phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file) 0.18 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_19270 3-deoxy-7-phosphoheptulonate synthase 0.18 CSW01_00635 diaminopimelate decarboxylase low > 62
Shewanella amazonensis SB2B 0.72 Sama_0657 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) 0.20 Sama_3250 diaminopimelate decarboxylase (RefSeq) low > 62
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS07160 phospho-2-dehydro-3-deoxyheptonate aldolase 0.18 HSERO_RS00950 diaminopimelate decarboxylase — —
Dechlorosoma suillum PS 0.67 Dsui_3444 phospho-2-dehydro-3-deoxyheptonate aldolase 0.21 Dsui_1182 diaminopimelate decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS26560 3-deoxy-7-phosphoheptulonate synthase AroG 0.19 QEN71_RS28080 diaminopimelate decarboxylase 0.43 61
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS03535 phospho-2-dehydro-3-deoxyheptonate aldolase 0.62 BPHYT_RS35090 diaminopimelate decarboxylase low > 109
Paraburkholderia graminis OAS925 0.67 ABIE53_000850 3-deoxy-7-phosphoheptulonate synthase 0.19 ABIE53_003749 diaminopimelate decarboxylase low > 113
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS05860 phospho-2-dehydro-3-deoxyheptonate aldolase 0.20 RR42_RS19050 diaminopimelate decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS01110 3-deoxy-7-phosphoheptulonate synthase AroG 0.20 ABZR87_RS02640 diaminopimelate decarboxylase 0.75 31
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_04687 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 0.18 H281DRAFT_05606 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS05460 3-deoxy-7-phosphoheptulonate synthase 0.20 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.66 UW163_RS08165 3-deoxy-7-phosphoheptulonate synthase 0.20 UW163_RS06625 diaminopimelate decarboxylase — —
Ralstonia solanacearum PSI07 0.66 RPSI07_RS11845 3-deoxy-7-phosphoheptulonate synthase 0.20 RPSI07_RS10250 diaminopimelate decarboxylase — —
Ralstonia solanacearum GMI1000 0.65 RS_RS13320 3-deoxy-7-phosphoheptulonate synthase 0.20 RS_RS14930 diaminopimelate decarboxylase — —
Castellaniella sp019104865 MT123 0.65 ABCV34_RS06825 3-deoxy-7-phosphoheptulonate synthase AroG 0.18 ABCV34_RS12685 diaminopimelate decarboxylase — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS02485 3-deoxy-7-phosphoheptulonate synthase 0.25 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS02730 3-deoxy-7-phosphoheptulonate synthase 0.25 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Caulobacter crescentus NA1000 0.63 CCNA_01463 3-deoxy-7-phosphoheptulonate synthase 0.23 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.63 CCNA_01463 3-deoxy-7-phosphoheptulonate synthase 0.23 CCNA_02296 diaminopimelate decarboxylase — —
Rhodanobacter sp. FW510-T8 0.63 OKGIIK_09785 3-deoxy-7-phosphoheptulonate synthase 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Rhodopseudomonas palustris CGA009 0.62 TX73_000140 3-deoxy-7-phosphoheptulonate synthase 0.22 TX73_024635 diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.61 Ac3H11_4034 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Variovorax sp. OAS795 0.60 ABID97_RS06345 3-deoxy-7-phosphoheptulonate synthase 0.18 ABID97_RS23305 diaminopimelate decarboxylase — —
Variovorax sp. SCN45 0.60 GFF4447 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS00390 3-deoxy-7-phosphoheptulonate synthase 0.24 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF581 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.19 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90

Not shown: 2 genomes with orthologs for JDDGAC_10395 only; 46 genomes with orthologs for JDDGAC_23610 only