Conservation of cofitness between JDDGAC_25110 and JDDGAC_16085 in Escherichia coli ECRC98

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_25110 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.0 JDDGAC_16085 dsbD protein-disulfide reductase DsbD 0.62 12
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01145 Ferredoxin YfhL 0.99 OHPLBJKB_03907 Thiol:disulfide interchange protein DsbD low > 73
Escherichia coli ECRC99 1.00 KEDOAH_06775 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 KEDOAH_15715 dsbD protein-disulfide reductase DsbD
Escherichia coli ECRC101 1.00 MCAODC_11975 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.99 MCAODC_02960 dsbD protein-disulfide reductase DsbD low > 87
Escherichia coli ECRC102 1.00 NIAGMN_19215 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 NIAGMN_10295 dsbD protein-disulfide reductase DsbD
Escherichia coli ECOR38 1.00 HEPCGN_20590 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.99 HEPCGN_10675 dsbD protein-disulfide reductase DsbD low > 87
Escherichia coli ECRC100 1.00 OKFHMN_21445 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 OKFHMN_12450 dsbD protein-disulfide reductase DsbD low > 80
Escherichia coli ECOR27 0.99 NOLOHH_13120 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.99 NOLOHH_04715 dsbD protein-disulfide reductase DsbD low > 75
Escherichia coli BL21 0.99 ECD_02456 putative 4Fe-4S cluster-containing protein 0.99 ECD_04006 thiol:disulfide interchange protein and activator of DsbC low > 61
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14495 4Fe-4S dicluster ferredoxin YfhL 0.99 ECOLIN_RS24030 protein-disulfide reductase DsbD
Escherichia fergusonii Becca 0.99 EFB2_01334 Ferredoxin YfhL 0.99 EFB2_04399 Thiol:disulfide interchange protein DsbD low > 86
Escherichia coli BW25113 0.99 b2562 yfhL predicted 4Fe-4S cluster-containing protein (NCBI) 0.99 b4136 dipZ thiol:disulfide interchange protein precursor (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_11920 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 BNILDI_06775 dsbD protein-disulfide reductase DsbD low > 75
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0084 4Fe-4S dicluster domain 0.84 EX28DRAFT_3333 Thiol:disulfide interchange protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2470 4Fe-4S ferredoxin, iron-sulfur binding 0.87 GFF2016 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) low > 78
Enterobacter sp. TBS_079 0.93 MPMX20_03433 Ferredoxin YfhL 0.82 MPMX20_00416 Thiol:disulfide interchange protein DsbD low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS21295 ferredoxin 0.80 BWI76_RS02315 protein-disulfide reductase DsbD
Serratia liquefaciens MT49 0.84 IAI46_19525 YfhL family 4Fe-4S dicluster ferredoxin 0.67 IAI46_01465 protein-disulfide reductase DsbD low > 86
Pectobacterium carotovorum WPP14 0.83 HER17_RS05840 YfhL family 4Fe-4S dicluster ferredoxin 0.65 HER17_RS18850 protein-disulfide reductase DsbD low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS15795 YfhL family 4Fe-4S dicluster ferredoxin 0.60 HGI48_RS02680 protein-disulfide reductase DsbD low > 71
Dickeya dadantii 3937 0.81 DDA3937_RS15710 YfhL family 4Fe-4S dicluster ferredoxin 0.61 DDA3937_RS02705 protein-disulfide reductase DsbD low > 74
Dickeya dianthicola ME23 0.80 DZA65_RS16875 YfhL family 4Fe-4S dicluster ferredoxin 0.60 DZA65_RS02835 protein-disulfide reductase DsbD low > 75
Rahnella sp. WP5 0.80 EX31_RS21860 YfhL family 4Fe-4S dicluster ferredoxin 0.64 EX31_RS08975 protein-disulfide reductase DsbD low > 89
Erwinia tracheiphila SCR3 0.78 LU632_RS15360 YfhL family 4Fe-4S dicluster ferredoxin 0.61 LU632_RS01840 protein-disulfide reductase DsbD
Pantoea sp. MT58 0.76 IAI47_04905 YfhL family 4Fe-4S dicluster ferredoxin 0.64 IAI47_17335 protein-disulfide reductase DsbD low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_03745 ferredoxin 0.49 CSW01_13635 thiol:disulfide interchange protein DsbD low > 62
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS02000 ferredoxin 0.29 RR42_RS19110 thiol:disulfide interchange protein
Dechlorosoma suillum PS 0.60 Dsui_1029 hypothetical protein 0.32 Dsui_0718 thiol:disulfide interchange protein
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS11080 4Fe-4S dicluster domain-containing protein 0.30 RALBFv3_RS07045 protein-disulfide reductase DsbD
Ralstonia solanacearum UW163 0.60 UW163_RS02500 4Fe-4S dicluster domain-containing protein 0.30 UW163_RS06570 protein-disulfide reductase DsbD
Ralstonia solanacearum PSI07 0.60 RPSI07_RS22220 4Fe-4S dicluster domain-containing protein 0.30 RPSI07_RS10195 protein-disulfide reductase DsbD
Shewanella oneidensis MR-1 0.59 SO1251 ferredoxin, 4Fe-4S (NCBI ptt file) 0.43 SO0696 dsbD thiol:disulfide interchange protein DsbD (NCBI ptt file)
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS06970 YfhL family 4Fe-4S dicluster ferredoxin 0.30 ABZR87_RS02695 protein-disulfide reductase DsbD
Shewanella sp. ANA-3 0.58 Shewana3_1067 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.44 Shewana3_3576 dipZ thiol:disulfide interchange protein precursor (RefSeq)
Ralstonia solanacearum GMI1000 0.58 RS_RS01930 4Fe-4S dicluster domain-containing protein 0.30 RS_RS14985 thiol:disulfide interchange protein DsbD
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS01675 YfhL family 4Fe-4S dicluster ferredoxin 0.28 QEN71_RS28120 protein-disulfide reductase DsbD
Shewanella amazonensis SB2B 0.58 Sama_1002 ferredoxin, 4Fe-4S (RefSeq) 0.42 Sama_0538 dipZ thiol:disulfide interchange protein precursor (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_4759 4Fe-4S ferredoxin, iron-sulfur binding protein 0.26 Psyr_4398 Protein-disulfide reductase
Shewanella loihica PV-4 0.57 Shew_2785 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.44 Shew_3266 dipZ thiol:disulfide interchange protein precursor (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.57 MIT1002_02343 putative ferredoxin-like protein 0.42 MIT1002_03939 Thiol:disulfide interchange protein DsbD precursor
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_4759 4Fe-4S ferredoxin, iron-sulfur binding protein 0.26 Psyr_4398 Protein-disulfide reductase
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS20685 ferredoxin 0.30 HSERO_RS00715 thiol:disulfide interchange protein
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_01943 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 0.28 H281DRAFT_05598 thiol:disulfide interchange protein DsbD
Paraburkholderia graminis OAS925 0.56 ABIE53_000703 ferredoxin 0.28 ABIE53_003757 thiol:disulfide interchange protein DsbD low > 113
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS02825 ferredoxin 0.28 BPHYT_RS17970 thiol:disulfide interchange protein
Pseudomonas sp. S08-1 0.54 OH686_14145 Uncharacterized ferredoxin-like protein YfhL 0.24 OH686_07580 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4571 4Fe-4S ferredoxin, iron-sulfur binding 0.28 Pf6N2E2_2398 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_13280 ferredoxin 0.28 AO356_02870 thiol:disulfide interchange protein
Pseudomonas sp. RS175 0.54 PFR28_04270 Ferredoxin 0.29 PFR28_01029 Thiol:disulfide interchange protein DsbD
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_0772 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 0.33 B158DRAFT_0153 Thiol:disulfide interchange protein
Pseudomonas putida KT2440 0.54 PP_5124 putative 4Fe-4S cluster-containing protein 0.27 PP_4235 thiol/disulfide interchange protein 2
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_980 4Fe-4S ferredoxin, iron-sulfur binding 0.30 PfGW456L13_2298 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2311 4Fe-4S ferredoxin, iron-sulfur binding 0.30 Pf1N1B4_210 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)
Pseudomonas simiae WCS417 0.53 PS417_26865 ferredoxin 0.27 PS417_19525 thiol:disulfide interchange protein
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28510 YfhL family 4Fe-4S dicluster ferredoxin 0.27 PFLU_RS21490 protein-disulfide reductase DsbD
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28510 YfhL family 4Fe-4S dicluster ferredoxin 0.27 PFLU_RS21490 protein-disulfide reductase DsbD
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08310 ferredoxin 0.27 AO353_19365 thiol:disulfide interchange protein
Pseudomonas stutzeri RCH2 0.51 Psest_0243 hypothetical protein 0.28 Psest_1603 Thiol:disulfide interchange protein low > 67

Not shown: 14 genomes with orthologs for JDDGAC_25110 only; 3 genomes with orthologs for JDDGAC_16085 only