Conservation of cofitness between IAI46_03910 and IAI46_04835 in Serratia liquefaciens MT49

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_03910 inner membrane protein YpjD 1.0 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.62 2
Rahnella sp. WP5 0.81 EX31_RS07735 inner membrane protein YpjD 0.89 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Pectobacterium carotovorum WPP14 0.81 HER17_RS05105 inner membrane protein YpjD 0.86 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli ECOR27 0.76 NOLOHH_12840 ypjD Inner membrane protein YpjD 0.84 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.62 31
Escherichia coli ECRC102 0.76 NIAGMN_18935 ypjD Inner membrane protein YpjD 0.84 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC62 0.76 BNILDI_11645 ypjD Inner membrane protein YpjD 0.84 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECOR38 0.76 HEPCGN_20285 ypjD Inner membrane protein YpjD 0.84 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 85
Escherichia coli ECRC99 0.76 KEDOAH_07055 ypjD Inner membrane protein YpjD 0.84 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC98 0.76 JDDGAC_24830 ypjD Inner membrane protein YpjD 0.84 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_01095 Inner membrane protein YpjD 0.84 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia coli BL21 0.76 ECD_02500 cytochrome c assembly protein family inner membrane protein 0.84 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 60
Escherichia coli ECRC101 0.76 MCAODC_11695 ypjD Inner membrane protein YpjD 0.84 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC101 0.76 OKFHMN_21165 ypjD Inner membrane protein YpjD 0.84 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BW25113 0.76 b2611 ypjD predicted inner membrane protein (RefSeq) 0.84 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Escherichia coli Nissle 1917 0.76 ECOLIN_RS14755 inner membrane protein YpjD 0.84 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF4167 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.84 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Klebsiella michiganensis M5al 0.76 BWI76_RS21535 inner membrane protein YpjD 0.84 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Escherichia fergusonii Becca 0.76 EFB2_01281 Inner membrane protein YpjD 0.84 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Pantoea sp. MT58 0.76 IAI47_04365 inner membrane protein YpjD 0.86 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Dickeya dianthicola 67-19 0.74 HGI48_RS16295 inner membrane protein YpjD 0.88 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Dickeya dianthicola ME23 0.74 DZA65_RS17390 inner membrane protein YpjD 0.88 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Dickeya dadantii 3937 0.74 DDA3937_RS16185 inner membrane protein YpjD 0.87 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Enterobacter asburiae PDN3 0.73 EX28DRAFT_2714 ABC-type uncharacterized transport system, permease component 0.83 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_03481 Inner membrane protein YpjD 0.83 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Erwinia tracheiphila SCR3 0.73 LU632_RS15675 inner membrane protein YpjD 0.85 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_02985 inner membrane protein YpjD 0.72 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Shewanella amazonensis SB2B 0.38 Sama_0887 hypothetical protein (RefSeq) 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 62
Shewanella sp. ANA-3 0.37 Shewana3_3019 cytochrome c assembly protein (RefSeq) 0.65 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.36 SO1355 membrane protein, putative (NCBI ptt file) 0.66 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.35 Shew_1061 cytochrome c assembly protein (RefSeq) 0.68 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Alteromonas macleodii MIT1002 0.33 MIT1002_01295 Inner membrane protein YpjD 0.67 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 70
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_04395 cytochrome C assembly protein 0.69 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pseudomonas sp. RS175 0.22 PFR28_00325 Inner membrane protein YpjD 0.66 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Pseudomonas sp. S08-1 0.22 OH686_17715 Inner membrane protein YpjD 0.66 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Pseudomonas putida KT2440 0.22 PP_1460 putative Membrane protein 0.68 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 96
Pseudomonas simiae WCS417 0.22 PS417_22930 cytochrome C assembly protein 0.67 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase — —
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_1714 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.68 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS24590 cytochrome c assembly protein 0.66 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS24590 cytochrome c assembly protein 0.66 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_06415 cytochrome C assembly protein 0.66 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 65
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_3151 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.66 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_1280 Cytochrome c assembly protein 0.66 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_1280 Cytochrome c assembly protein 0.66 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas stutzeri RCH2 0.21 Psest_3135 ABC-type uncharacterized transport system, permease component 0.65 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_875 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.69 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Acinetobacter radioresistens SK82 0.20 MPMX26_02469 Inner membrane protein YpjD 0.50 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Marinobacter adhaerens HP15 0.18 HP15_756 cytochrome c assembly protein 0.61 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_09575 ypjD Cytochrome C assembly protein 0.48 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Castellaniella sp019104865 MT123 0.16 ABCV34_RS09015 cytochrome c biogenesis protein CcsA 0.50 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Xanthomonas campestris pv. campestris strain 8004 0.15 Xcc-8004.3775.1 FIG001154: CcsA-related protein 0.47 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 74
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS02520 cytochrome c biogenesis protein CcsA 0.49 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Rhodanobacter denitrificans MT42 0.13 LRK55_RS02275 cytochrome c biogenesis protein CcsA 0.49 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Lysobacter sp. OAE881 0.13 ABIE51_RS07730 cytochrome c biogenesis protein CcsA 0.46 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS08835 cytochrome c biogenesis protein CcsA 0.47 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Ralstonia solanacearum GMI1000 0.12 RS_RS14050 inner membrane protein YpjD 0.48 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Ralstonia solanacearum UW163 0.11 UW163_RS07525 ABC transporter permease 0.48 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS06100 ABC transporter permease 0.48 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76

Not shown: 0 genomes with orthologs for IAI46_03910 only; 43 genomes with orthologs for IAI46_04835 only