Conservation of cofitness between HSERO_RS05945 and HSERO_RS14525 in Herbaspirillum seropedicae SmR1

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05945 hypothetical protein 1.0 HSERO_RS14525 membrane protein 0.25 11
Ralstonia solanacearum PSI07 0.55 RPSI07_RS12675 JAB domain-containing protein 0.65 RPSI07_RS05875 YnfA family protein low > 81
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS00330 DNA repair protein RadC 0.51 ABZR87_RS18650 YnfA family protein low > 80
Ralstonia solanacearum GMI1000 0.55 RS_RS12270 JAB domain-containing protein 0.65 RS_RS23295 YnfA family protein low > 80
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS04710 JAB domain-containing protein 0.64 RALBFv3_RS17705 YnfA family protein low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS08960 JAB domain-containing protein 0.64 UW163_RS21445 YnfA family protein — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS16995 hypothetical protein 0.79 RR42_RS34240 putative efflux pump, required for thallium (I) resistance (from data) low > 128
Dechlorosoma suillum PS 0.53 Dsui_1537 DNA repair protein radc 0.72 Dsui_1874 hypothetical protein low > 51
Pseudomonas sp. RS175 0.49 PFR28_04412 hypothetical protein 0.36 PFR28_00878 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2126 DNA repair protein RadC 0.45 Pf1N1B4_379 Protein of unknown function UPF0060 low > 87
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_09220 hypothetical protein 0.45 AO353_02180 hypothetical protein low > 101
Paraburkholderia graminis OAS925 0.48 ABIE53_003289 DNA repair protein RadC 0.80 ABIE53_005763 small multidrug resistance family-3 protein low > 113
Pseudomonas stutzeri RCH2 0.47 Psest_3803 DNA repair protein radc 0.59 Psest_2244 Uncharacterized conserved protein low > 67
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04066 DNA replication and repair protein RadC 0.77 H281DRAFT_03468 small multidrug resistance family-3 protein low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF1170 DNA repair protein RadC 0.47 GFF5104 Protein of unknown function UPF0060 low > 90
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_12545 hypothetical protein 0.37 AO356_03600 putative efflux pump, required for thallium (I) resistance (from data) low > 104
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS03085 DNA repair protein RadC 0.78 QEN71_RS21195 YnfA family protein low > 153
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS15625 hypothetical protein 0.75 BPHYT_RS23685 membrane protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4377 DNA repair protein RadC 0.36 Pf6N2E2_2547 Protein of unknown function UPF0060 low > 103
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_798 DNA repair protein RadC 0.37 PfGW456L13_2149 Protein of unknown function UPF0060 low > 87
Marinobacter adhaerens HP15 0.43 HP15_3321 DNA repair protein RadC-like protein 0.76 HP15_1427 protein belonging to uncharacterized protein family UPF0060 low > 73
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.4897.1 DNA repair protein RadC 0.62 Xcc-8004.1564.1 Protein of unknown function UPF0060 low > 74
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0222 DNA replication and repair protein RadC 0.30 Psyr_3752 Protein of unknown function UPF0060 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0222 DNA replication and repair protein RadC 0.30 Psyr_3752 Protein of unknown function UPF0060 low > 86
Pseudomonas sp. S08-1 0.42 OH686_13620 UPF0758 family protein 0.24 OH686_20960 Protein of unknown function UPF0060 low > 80
Alteromonas macleodii MIT1002 0.41 MIT1002_00049 DNA repair protein RadC 0.76 MIT1002_00558 hypothetical protein low > 70
Variovorax sp. SCN45 0.41 GFF5700 UPF0758 family protein 0.85 GFF1184 UPF0060 membrane protein YnfA low > 127
Serratia liquefaciens MT49 0.41 IAI46_24825 DNA repair protein RadC 0.67 IAI46_11715 YnfA family protein low > 86
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1774 DNA repair protein RadC 0.53 Ac3H11_4917 Protein of unknown function UPF0060 low > 79
Acinetobacter radioresistens SK82 0.39 MPMX26_02636 hypothetical protein 0.58 MPMX26_01285 hypothetical protein — —
Rahnella sp. WP5 0.39 EX31_RS14470 JAB domain-containing protein 0.57 EX31_RS07090 YnfA family protein low > 89
Pantoea sp. MT58 0.39 IAI47_00620 DNA repair protein RadC 0.55 IAI47_09800 YnfA family protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF371 DNA repair protein RadC 0.55 GFF2488 Protein of unknown function UPF0060 low > 78
Enterobacter sp. TBS_079 0.38 MPMX20_00097 hypothetical protein 0.64 MPMX20_02091 hypothetical protein low > 85
Escherichia coli BL21 0.38 ECD_03495 UPF0758 family protein 0.64 ECD_01551 UPF0060 family inner membrane protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00064 hypothetical protein 0.64 OHPLBJKB_02144 hypothetical protein low > 73
Enterobacter asburiae PDN3 0.38 EX28DRAFT_3888 DNA repair protein radc 0.62 EX28DRAFT_1458 Uncharacterized conserved protein low > 76
Escherichia coli ECRC62 0.38 BNILDI_04015 radC DNA repair protein RadC 0.64 BNILDI_17095 ynfA YnfA family protein low > 75
Escherichia coli ECOR27 0.38 NOLOHH_07500 radC DNA repair protein RadC 0.64 NOLOHH_18305 ynfA YnfA family protein low > 75
Escherichia coli ECRC100 0.37 OKFHMN_15620 radC DNA repair protein RadC 0.64 OKFHMN_27800 ynfA YnfA family protein — —
Escherichia fergusonii Becca 0.37 EFB2_00175 hypothetical protein 0.64 EFB2_02410 hypothetical protein low > 86
Escherichia coli ECRC102 0.37 NIAGMN_13380 radC DNA repair protein RadC 0.64 NIAGMN_00275 ynfA YnfA family protein — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS20730 DNA repair protein RadC 0.64 ECOLIN_RS08845 YnfA family protein — —
Escherichia coli ECRC99 0.37 KEDOAH_12530 radC DNA repair protein RadC 0.64 KEDOAH_00305 ynfA YnfA family protein — —
Escherichia coli ECRC101 0.37 MCAODC_06130 radC DNA repair protein RadC 0.64 MCAODC_17610 ynfA YnfA family protein low > 87
Castellaniella sp019104865 MT123 0.37 ABCV34_RS00910 DNA repair protein RadC 0.64 ABCV34_RS01015 YnfA family protein low > 48
Escherichia coli ECOR38 0.37 HEPCGN_14445 radC DNA repair protein RadC 0.64 HEPCGN_06180 ynfA YnfA family protein — —
Escherichia coli BW25113 0.37 b3638 radC DNA repair protein (VIMSS) 0.64 b1582 ynfA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC98 0.37 JDDGAC_19245 radC DNA repair protein RadC 0.64 JDDGAC_02390 ynfA YnfA family protein — —
Lysobacter sp. OAE881 0.35 ABIE51_RS00095 DNA repair protein RadC 0.42 ABIE51_RS03580 YnfA family protein low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS01715 DNA repair protein RadC 0.41 ABZR88_RS10620 YnfA family protein low > 71
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS00510 DNA repair protein RadC 0.44 A4249_RS10420 YnfA family protein low > 48
Rhodopseudomonas palustris CGA009 0.28 TX73_002000 DNA repair protein RadC 0.42 TX73_019875 YnfA family protein low > 86
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_3175 DNA repair protein radc 0.51 Ga0059261_1942 putative efflux pump, required for thallium (I) resistance (from data) low > 68

Not shown: 38 genomes with orthologs for HSERO_RS05945 only; 7 genomes with orthologs for HSERO_RS14525 only