Conservation of cofitness between HSERO_RS22035 and HSERO_RS13415 in Herbaspirillum seropedicae SmR1

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 1.0 HSERO_RS13415 VdlD 0.34 2
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 0.30 CSW01_18835 acyl-CoA thioesterase low > 62
Alteromonas macleodii MIT1002 0.64 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA 0.47 MIT1002_01491 putative acyl-CoA thioester hydrolase low > 70
Pseudomonas stutzeri RCH2 0.62 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.71 Psest_0771 Acyl-CoA hydrolase low > 67
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.70 Pf6N2E2_4269 cytosolic long-chain acyl-CoA thioester hydrolase family protein low > 103
Shewanella amazonensis SB2B 0.61 Sama_1801 hypothetical protein (RefSeq) 0.36 Sama_1977 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) low > 62
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 0.70 Pf1N1B4_2001 cytosolic long-chain acyl-CoA thioester hydrolase family protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.74 AO353_10080 acyl-CoA hydrolase low > 101
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.70 PfGW456L13_719 cytosolic long-chain acyl-CoA thioester hydrolase family protein low > 87
Shewanella sp. ANA-3 0.60 Shewana3_2117 PP-loop domain-containing protein (RefSeq) 0.33 Shewana3_2555 thioesterase superfamily protein (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.73 AO356_11970 acyl-CoA hydrolase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_3705 conserved hypothetical protein 0.70 Psyr_5069 Thioesterase superfamily low > 86
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_3705 conserved hypothetical protein 0.70 Psyr_5069 Thioesterase superfamily low > 86
Pseudomonas sp. RS175 0.60 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.73 PFR28_04527 hypothetical protein low > 88
Pseudomonas simiae WCS417 0.60 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.72 PS417_28260 VdlD low > 88
Dechlorosoma suillum PS 0.60 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.79 Dsui_0310 acyl-CoA hydrolase low > 51
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA 0.73 RR42_RS28960 acyl-CoA hydrolase low > 128
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA 0.74 ABZR87_RS17075 acyl-CoA thioesterase low > 80
Ralstonia solanacearum PSI07 0.59 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.76 RPSI07_RS00670 acyl-CoA thioesterase low > 81
Pseudomonas putida KT2440 0.59 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.64 PP_5356 Protein VdlD low > 96
Shewanella oneidensis MR-1 0.59 SO2354 conserved hypothetical protein (NCBI ptt file) 0.33 SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.72 PFLU_RS29920 acyl-CoA thioesterase low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.72 PFLU_RS29920 acyl-CoA thioesterase low > 109
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.75 RALBFv3_RS22490 acyl-CoA thioesterase low > 76
Ralstonia solanacearum UW163 0.59 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.75 UW163_RS23035 acyl-CoA thioesterase — —
Ralstonia solanacearum GMI1000 0.59 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA 0.75 RS_RS18125 acyl-CoA thioesterase low > 80
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1817 tRNA(Cytosine32)-2-thiocytidine synthetase 0.78 Ac3H11_3244 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.52 26
Paraburkholderia graminis OAS925 0.59 ABIE53_000036 tRNA 2-thiocytidine biosynthesis protein TtcA 0.33 ABIE53_003085 acyl-CoA hydrolase low > 113
Marinobacter adhaerens HP15 0.58 HP15_2116 PP-loop domain protein 0.66 HP15_1435 thioesterase superfamily protein low > 73
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_05824 tRNA s(2)C-32 sulfurtransferase 0.33 H281DRAFT_04313 Acyl-CoA hydrolase low > 103
Shewanella loihica PV-4 0.58 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.34 Shew_1607 thioesterase superfamily protein (RefSeq) low > 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF1658 tRNA(Cytosine32)-2-thiocytidine synthetase 0.75 GFF2680 cytosolic long-chain acyl-CoA thioester hydrolase family protein low > 90
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS16485 tRNA 2-thiocytidine(32) synthetase TtcA 0.34 ABZR86_RS22000 acyl-CoA thioesterase low > 74
Lysobacter sp. OAE881 0.54 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.28 ABIE51_RS06380 acyl-CoA thioesterase low > 62
Acinetobacter radioresistens SK82 0.54 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase 0.64 MPMX26_02367 hypothetical protein low > 36
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_13200 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.33 OKGIIK_10560 yciA acyl-CoA thioesterase low > 52
Sinorhizobium meliloti 1021 0.45 SMc00534 C32 tRNA thiolase 0.61 SM_b21634 acyl-CoA thioester hydrolase low > 103
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_2293 PP-loop domain protein (RefSeq) 0.34 DvMF_2309 thioesterase superfamily protein (RefSeq) low > 51

Not shown: 41 genomes with orthologs for HSERO_RS22035 only; 4 genomes with orthologs for HSERO_RS13415 only