Conservation of cofitness between HSERO_RS05425 and HSERO_RS10000 in Herbaspirillum seropedicae SmR1

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05425 decarboxylase 1.0 HSERO_RS10000 mannose-1-phosphate guanylyltransferase 0.34 7
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS22440 DNA-binding protein 0.53 BPHYT_RS31080 mannose-1-phosphate guanyltransferase
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_03509 transcriptional regulator, GntR family 0.55 H281DRAFT_04847 mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8) low > 103
Paraburkholderia graminis OAS925 0.52 ABIE53_004748 GntR family transcriptional regulator/MocR family aminotransferase 0.54 ABIE53_002179 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 113
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS21340 DNA-binding protein 0.52 RR42_RS33245 mannose-1-phosphate guanyltransferase low > 128
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS17355 PLP-dependent aminotransferase family protein 0.56 QEN71_RS25610 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 153
Ralstonia solanacearum PSI07 0.48 RPSI07_RS23800 PLP-dependent aminotransferase family protein 0.44 RPSI07_RS19805 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 81
Castellaniella sp019104865 MT123 0.45 ABCV34_RS01775 PLP-dependent aminotransferase family protein 0.48 ABCV34_RS12925 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Pectobacterium carotovorum WPP14 0.44 HER17_RS09875 PLP-dependent aminotransferase family protein 0.54 HER17_RS14525 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 75
Dickeya dianthicola ME23 0.44 DZA65_RS12410 PLP-dependent aminotransferase family protein 0.50 DZA65_RS19720 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 75
Dickeya dianthicola 67-19 0.44 HGI48_RS11865 PLP-dependent aminotransferase family protein 0.50 HGI48_RS18585 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 71
Dickeya dadantii 3937 0.43 DDA3937_RS11835 PLP-dependent aminotransferase family protein 0.50 DDA3937_RS18655 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 74
Serratia liquefaciens MT49 0.42 IAI46_22170 PLP-dependent aminotransferase family protein 0.57 IAI46_08070 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 86
Rahnella sp. WP5 0.41 EX31_RS00090 PLP-dependent aminotransferase family protein 0.53 EX31_RS02880 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 89
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF2040 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.49 GFF90 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) low > 90
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS20415 PLP-dependent aminotransferase family protein 0.54 ABZR86_RS18715 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 74
Azospirillum sp. SherDot2 0.34 MPMX19_03847 HTH-type transcriptional regulatory protein GabR 0.52 MPMX19_06734 Alginate biosynthesis protein AlgA low > 112
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_3163 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.53 PfGW456L13_1674 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8) low > 87
Variovorax sp. SCN45 0.31 GFF1662 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.43 GFF70 Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) / Mannose-6-phosphate isomerase (EC 5.3.1.8) low > 127
Variovorax sp. OAS795 0.30 ABID97_RS21960 PLP-dependent aminotransferase family protein 0.43 ABID97_RS19170 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 91
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_20995 transcriptional regulator 0.53 AO353_04735 mannose-1-phosphate guanylyltransferase low > 101
Magnetospirillum magneticum AMB-1 0.30 AMB_RS06965 PLP-dependent aminotransferase family protein 0.52 AMB_RS00190 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_5999 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.53 Pf1N1B4_993 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8) low > 87
Rhodopseudomonas palustris CGA009 0.30 TX73_007155 PLP-dependent aminotransferase family protein 0.47 TX73_017175 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 86
Enterobacter asburiae PDN3 0.29 EX28DRAFT_2501 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 0.56 EX28DRAFT_0506 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 76
Pseudomonas sp. S08-1 0.29 OH686_13310 Transcriptional regulator, GntR family domain / Aspartate aminotransferase 0.52 OH686_02105 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 80
Enterobacter sp. TBS_079 0.29 MPMX20_01059 HTH-type transcriptional regulatory protein GabR 0.56 MPMX20_03031 Mannose-1-phosphate guanylyltransferase 1 low > 85
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS29850 PLP-dependent aminotransferase family protein 0.56 PFLU_RS17870 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS29850 PLP-dependent aminotransferase family protein 0.56 PFLU_RS17870 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 109
Dinoroseobacter shibae DFL-12 0.29 Dshi_0609 transcriptional regulator, GntR family with aminotransferase domain (RefSeq) 0.43 Dshi_1897 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq) low > 64
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_5056 transcriptional regulator, GntR family 0.54 Psyr_1052 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) low > 86
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_5056 transcriptional regulator, GntR family 0.54 Psyr_1052 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) low > 86
Pseudomonas simiae WCS417 0.28 PS417_12985 DNA-binding protein 0.52 PS417_04790 mannose-1-phosphate guanylyltransferase low > 88
Pseudomonas putida KT2440 0.28 PP_5342 Transcriptional regulator, GntR family 0.53 PP_1277 mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase low > 96
Rhodospirillum rubrum S1H 0.28 Rru_A1143 regulatory protein GntR (NCBI) 0.55 Rru_B0046 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (NCBI) low > 58
Azospirillum brasilense Sp245 0.28 AZOBR_RS22530 transcriptional regulator 0.60 AZOBR_RS33830 mannose-1-phosphate guanylyltransferase low > 97
Marinobacter adhaerens HP15 0.27 HP15_2761 transcriptional regulator, GntR family with aminotransferase domain protein 0.55 HP15_444 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Dechlorosoma suillum PS 0.27 Dsui_2252 transcriptional regulator with HTH domain and aminotransferase domain 0.43 Dsui_0087 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 51
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_12070 GntR family transcriptional regulator 0.52 AO356_17260 mannose-1-phosphate guanylyltransferase low > 104
Phaeobacter inhibens DSM 17395 0.27 PGA1_262p01530 transcriptional regulator, GntR family 0.43 PGA1_65p00290 algA: alginate biosynthesis protein
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4288 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.52 Pf6N2E2_5377 Mannose-6-phosphate isomerase (EC 5.3.1.8) / Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF1580 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.56 GFF3879 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8) low > 78
Pseudomonas sp. RS175 0.26 PFR28_04508 HTH-type transcriptional regulatory protein GabR 0.53 PFR28_03566 Alginate biosynthesis protein AlgA low > 88
Escherichia coli ECRC101 0.26 MCAODC_11375 aRO8 DNA-binding transcriptional regulator 0.56 MCAODC_20575 manC mannose-1-phosphate guanylyltransferase ManC low > 87
Escherichia coli ECRC102 0.26 NIAGMN_18620 aRO8 DNA-binding transcriptional regulator 0.56 NIAGMN_22310 manC mannose-1-phosphate guanylyltransferase ManC
Escherichia coli ECRC99 0.26 KEDOAH_07285 aRO8 DNA-binding transcriptional regulator 0.56 KEDOAH_03785 manC mannose-1-phosphate guanylyltransferase ManC
Escherichia coli ECRC100 0.26 OKFHMN_20855 aRO8 DNA-binding transcriptional regulator 0.56 OKFHMN_24365 manC mannose-1-phosphate guanylyltransferase ManC low > 80
Escherichia coli ECRC98 0.26 JDDGAC_24515 aRO8 DNA-binding transcriptional regulator 0.56 JDDGAC_28475 manC mannose-1-phosphate guanylyltransferase ManC low > 86
Lysobacter sp. OAE881 0.26 ABIE51_RS00310 PLP-dependent aminotransferase family protein 0.52 ABIE51_RS04370 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 62
Escherichia fergusonii Becca 0.26 EFB2_01257 HTH-type transcriptional regulatory protein GabR 0.56 EFB2_01805 Mannose-1-phosphate guanylyltransferase 1 low > 86
Escherichia coli Nissle 1917 0.26 ECOLIN_RS14900 PLP-dependent aminotransferase family protein 0.56 ECOLIN_RS12075 mannose-1-phosphate guanyltransferase low > 55
Escherichia coli ECOR38 0.26 HEPCGN_20050 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain 0.56 HEPCGN_03065 manC mannose-1-phosphate guanylyltransferase ManC low > 87
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_3005 transcriptional regulator, GntR family with aminotransferase domain (RefSeq) 0.37 DvMF_2691 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU2086 transcriptional regulator, GntR family (TIGR) 0.40 DVU0697 rfbA mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (TIGR)
Rhizobium sp. OAE497 0.24 ABIE40_RS04930 PLP-dependent aminotransferase family protein 0.44 ABIE40_RS14845 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase low > 107

Not shown: 11 genomes with orthologs for HSERO_RS05425 only; 17 genomes with orthologs for HSERO_RS10000 only