| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS04345 | | membrane protein | 1.0 | HSERO_RS02415 | | hemolysin D | 0.35 | 3 |
| Paraburkholderia sabiae LMG 24235 | 0.64 | QEN71_RS15210 | | NAD(P)/FAD-dependent oxidoreductase | 0.47 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS13540 | | NAD(P)/FAD-dependent oxidoreductase | 0.56 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS14990 | | membrane protein | 0.48 | RR42_RS32415 | | hemolysin D | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_004862 | | putative Rossmann fold flavoprotein | 0.42 | ABIE53_003409 | | membrane fusion protein (multidrug efflux system) | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS33560 | | membrane protein | 0.43 | BPHYT_RS16175 | | hemolysin D | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS11135 | | NAD(P)/FAD-dependent oxidoreductase | 0.55 | RS_RS00050 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Ralstonia solanacearum UW163 | 0.61 | UW163_RS09980 | | NAD(P)/FAD-dependent oxidoreductase | 0.55 | UW163_RS04130 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.61 | RALBFv3_RS03690 | | NAD(P)/FAD-dependent oxidoreductase | 0.55 | RALBFv3_RS09450 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_06012 | | hypothetical protein | 0.42 | H281DRAFT_04171 | | membrane fusion protein, multidrug efflux system | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.60 | ABZR87_RS15620 | | NAD(P)/FAD-dependent oxidoreductase | 0.50 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.59 | GFF3659 | | NAD(FAD)-utilizing dehydrogenases | 0.53 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | — | — |
| Castellaniella sp019104865 MT123 | 0.58 | ABCV34_RS08895 | | NAD(P)/FAD-dependent oxidoreductase | 0.38 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.57 | Ac3H11_3253 | | NAD(FAD)-utilizing dehydrogenases | 0.47 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | low | > 79 |
| Variovorax sp. SCN45 | 0.57 | GFF4713 | | Uncharacterized protein YhiN | 0.49 | GFF3726 | | RND efflux system, membrane fusion protein | low | > 127 |
| Variovorax sp. OAS795 | 0.55 | ABID97_RS20650 | | NAD(P)/FAD-dependent oxidoreductase | 0.52 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | low | > 91 |
| Sinorhizobium meliloti 1021 | 0.54 | SMc00763 | | hypothetical protein | 0.42 | SMc02868 | | multidrug efflux system protein | low | > 103 |
| Rhodanobacter sp. FW510-T8 | 0.52 | OKGIIK_03505 | yhiN | NAD(P)/FAD-dependent oxidoreductase | 0.38 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | low | > 52 |
| Agrobacterium fabrum C58 | 0.51 | Atu0603 | | hypothetical protein | 0.40 | Atu3203 | | RND multidrug efflux membrane permease | low | > 89 |
| Rhodanobacter denitrificans MT42 | 0.50 | LRK55_RS14395 | | NAD(P)/FAD-dependent oxidoreductase | 0.36 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | low | > 63 |
| Marinobacter adhaerens HP15 | 0.50 | HP15_1033 | | flavoprotein, NADB Rossmann superfamily | 0.20 | HP15_932 | | efflux transporter, RND family, MFP subunit | low | > 73 |
| Rhodanobacter denitrificans FW104-10B01 | 0.50 | LRK54_RS14680 | | NAD(P)/FAD-dependent oxidoreductase | 0.36 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | low | > 59 |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS09810 | | NAD(P)/FAD-dependent oxidoreductase | 0.33 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.49 | CSW01_00430 | | NAD(P)/FAD-dependent oxidoreductase | 0.12 | CSW01_08415 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_00118 | | N-methyltryptophan oxidase | 0.36 | MIT1002_00134 | | Acriflavine resistance protein A precursor | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_1203 | | flavoprotein, HI0933 family | 0.33 | B158DRAFT_0734 | | RND family efflux transporter, MFP subunit | low | > 40 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_04173 | | hypothetical protein | 0.44 | PFR28_02462 | | Multidrug resistance protein MexA | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_2411 | | FIG00953568: hypothetical protein | 0.46 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | — | — |
| Pseudomonas simiae WCS417 | 0.47 | PS417_26375 | | membrane protein | 0.48 | PS417_12590 | | RND transporter | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS28025 | | NAD(P)/FAD-dependent oxidoreductase | 0.49 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS28025 | | NAD(P)/FAD-dependent oxidoreductase | 0.49 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Enterobacter asburiae PDN3 | 0.46 | EX28DRAFT_4070 | | flavoprotein, HI0933 family | 0.45 | EX28DRAFT_3318 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_4672 | | FIG00953568: hypothetical protein | 0.46 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_07855 | | hypothetical protein | 0.46 | AO353_26840 | | RND transporter | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_13765 | | hypothetical protein | 0.46 | AO356_28725 | | RND transporter | — | — |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_04392 | | hypothetical protein | 0.43 | MPMX20_04174 | | Multidrug export protein AcrE | low | > 85 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_1077 | | FIG00953568: hypothetical protein | 0.47 | PfGW456L13_2955 | | RND efflux system, membrane fusion protein CmeA | low | > 87 |
| Pseudomonas putida KT2440 | 0.44 | PP_4953 | | putative oxidoreductase with FAD/NAD(P)-binding domain | 0.45 | PP_3455 | | Multidrug efflux RND membrane fusion protein | low | > 96 |
| Dinoroseobacter shibae DFL-12 | 0.43 | Dshi_2710 | | HI0933 family protein (RefSeq) | 0.13 | Dshi_0916 | | efflux transporter, RND family, MFP subunit (RefSeq) | low | > 64 |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_02534 | | hypothetical protein | 0.40 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | low | > 36 |
| Desulfovibrio vulgaris Miyazaki F | 0.37 | DvMF_0830 | | HI0933 family protein (RefSeq) | 0.28 | DvMF_2164 | | efflux transporter, RND family, MFP subunit (RefSeq) | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.36 | CA265_RS07750 | | aminoacetone oxidase family FAD-binding enzyme | 0.23 | CA265_RS23015 | | efflux transporter periplasmic adaptor subunit | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.36 | ABZR88_RS09315 | | NAD(P)/FAD-dependent oxidoreductase | 0.21 | ABZR88_RS03045 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.17 | CA264_05900 | | aminoacetone oxidase family FAD-binding enzyme | 0.23 | CA264_03650 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Synechococcus elongatus PCC 7942 | 0.16 | Synpcc7942_2067 | | hypothetical protein | 0.12 | Synpcc7942_2368 | | Secretion protein HlyD | low | > 38 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.13 | Echvi_3335 | | flavoprotein, HI0933 family | 0.21 | Echvi_3741 | | RND family efflux transporter, MFP subunit | low | > 79 |
Not shown: 41 genomes with orthologs for HSERO_RS04345 only; 11 genomes with orthologs for HSERO_RS02415 only