Conservation of cofitness between HSERO_RS07145 and HSERO_RS01965 in Herbaspirillum seropedicae SmR1

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07145 hypothetical protein 1.0 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.33 20
Dechlorosoma suillum PS 0.27 Dsui_3403 TIGR02099 family protein 0.66 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Acidovorax sp. GW101-3H11 0.25 Ac3H11_1208 FIG005080: Possible exported protein 0.54 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 79
Variovorax sp. SCN45 0.24 GFF5444 FIG005080: Possible exported protein 0.59 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF2534 FIG005080: Possible exported protein 0.57 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Variovorax sp. OAS795 0.22 ABID97_RS02005 YhdP family protein 0.58 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 91
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS01095 YhdP family protein 0.74 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS13305 TIGR02099 family protein 0.75 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Paraburkholderia graminis OAS925 0.21 ABIE53_000853 uncharacterized protein (TIGR02099 family) 0.74 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_04690 TIGR02099 family protein 0.74 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 103
Ralstonia solanacearum PSI07 0.21 RPSI07_RS11860 TIGR02099 family protein 0.74 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 81
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS05445 TIGR02099 family protein 0.74 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Ralstonia solanacearum UW163 0.21 UW163_RS08180 TIGR02099 family protein 0.74 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS26545 AsmA-like C-terminal region-containing protein 0.74 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 153
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS03550 hypothetical protein 0.74 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Cupriavidus basilensis FW507-4G11 0.19 RR42_RS05885 hypothetical protein 0.74 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 23
Dyella japonica UNC79MFTsu3.2 0.09 ABZR86_RS21725 YhdP family protein 0.52 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Rhodanobacter sp. FW510-T8 0.08 OKGIIK_10285 TIGR02099 family protein 0.52 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase — —
Pseudomonas syringae pv. syringae B728a 0.08 Psyr_4158 conserved hypothetical protein 0.60 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.08 Psyr_4158 conserved hypothetical protein 0.60 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Lysobacter sp. OAE881 0.08 ABIE51_RS06790 YhdP family protein 0.47 ABIE51_RS17450 Mur ligase family protein low > 62
Serratia liquefaciens MT49 0.08 IAI46_22695 AsmA2 domain-containing protein YhdP 0.58 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Rhodanobacter denitrificans MT42 0.08 LRK55_RS03150 YhdP family protein 0.53 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Rhodanobacter denitrificans FW104-10B01 0.08 LRK54_RS03400 TIGR02099 family protein 0.53 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Klebsiella michiganensis M5al 0.07 BWI76_RS25475 TIGR02099 family protein 0.58 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.07 GFF2139 FIG005080: Possible exported protein 0.58 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 78
Vibrio cholerae E7946 ATCC 55056 0.07 CSW01_02210 DUF3971 domain-containing protein 0.57 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 62
Dickeya dadantii 3937 0.07 DDA3937_RS01455 AsmA2 domain-containing protein YhdP 0.58 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Pseudomonas sp. S08-1 0.07 OH686_08590 Possible exported protein 0.61 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Enterobacter sp. TBS_079 0.07 MPMX20_04152 hypothetical protein 0.58 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Escherichia coli BL21 0.07 ECD_03105 DUF3971-AsmA2 domains protein 0.58 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 61
Dickeya dianthicola 67-19 0.07 HGI48_RS01375 AsmA2 domain-containing protein YhdP 0.58 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 49
Dickeya dianthicola ME23 0.07 DZA65_RS01435 AsmA2 domain-containing protein 0.57 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Enterobacter asburiae PDN3 0.07 EX28DRAFT_3296 TIGR02099 family protein 0.58 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Escherichia coli ECOR38 0.07 HEPCGN_16615 yhdP AsmA2 domain-containing protein YhdP 0.58 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.78 36
Escherichia coli ECRC98 0.07 JDDGAC_21375 yhdP AsmA2 domain-containing protein YhdP 0.58 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 86
Escherichia coli ECRC101 0.07 MCAODC_08270 yhdP AsmA2 domain-containing protein YhdP 0.58 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Pseudomonas putida KT2440 0.07 PP_0938 conserved protein of unknown function 0.61 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 96
Escherichia coli ECRC102 0.07 NIAGMN_15510 yhdP AsmA2 domain-containing protein YhdP 0.58 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC100 0.07 OKFHMN_17750 yhdP AsmA2 domain-containing protein YhdP 0.58 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 80
Escherichia coli ECRC99 0.07 KEDOAH_10400 yhdP AsmA2 domain-containing protein YhdP 0.58 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia fergusonii Becca 0.07 EFB2_00585 hypothetical protein 0.58 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.07 OHPLBJKB_00459 hypothetical protein 0.58 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 73
Escherichia coli ECOR27 0.07 NOLOHH_09535 yhdP AsmA2 domain-containing protein YhdP 0.58 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli ECRC62 0.07 BNILDI_01985 yhdP AsmA2 domain-containing protein YhdP 0.58 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli BW25113 0.07 b4472 yhdP conserved membrane protein, predicted transporter (NCBI) 0.58 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) low > 76
Escherichia coli Nissle 1917 0.07 ECOLIN_RS18600 AsmA2 domain-containing protein YhdP 0.58 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.80 17
Rahnella sp. WP5 0.06 EX31_RS12260 AsmA2 domain-containing protein 0.56 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 89
Pseudomonas stutzeri RCH2 0.06 Psest_3322 TIGR02099 family protein 0.60 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 67
Pseudomonas fluorescens FW300-N2E2 0.06 Pf6N2E2_3282 FIG005080: Possible exported protein 0.63 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.06 AO353_05225 hypothetical protein 0.62 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 101
Pseudomonas fluorescens GW456-L13 0.06 PfGW456L13_5028 FIG005080: Possible exported protein 0.62 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.06 AO356_07105 hypothetical protein 0.63 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 104
Pectobacterium carotovorum WPP14 0.06 HER17_RS20145 AsmA2 domain-containing protein YhdP 0.57 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Pseudomonas sp. RS175 0.06 PFR28_00159 hypothetical protein 0.63 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 88
Shewanella sp. ANA-3 0.06 Shewana3_3643 hypothetical protein (RefSeq) 0.60 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) low > 73
Pseudomonas fluorescens FW300-N1B4 0.05 Pf1N1B4_1094 FIG005080: Possible exported protein 0.62 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —

Not shown: 0 genomes with orthologs for HSERO_RS07145 only; 17 genomes with orthologs for HSERO_RS01965 only