Conservation of cofitness between HER17_RS06930 and HER17_RS15910 in Pectobacterium carotovorum WPP14

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06930 50S ribosomal protein L3 N(5)-glutamine methyltransferase 1.0 HER17_RS15910 2-dehydropantoate 2-reductase 0.88 17
Dickeya dadantii 3937 0.90 DDA3937_RS14585 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.79 DDA3937_RS05555 2-dehydropantoate 2-reductase low > 74
Dickeya dianthicola 67-19 0.90 HGI48_RS14535 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.79 HGI48_RS05615 2-dehydropantoate 2-reductase low > 71
Dickeya dianthicola ME23 0.90 DZA65_RS15470 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.79 DZA65_RS05940 2-dehydropantoate 2-reductase low > 75
Serratia liquefaciens MT49 0.86 IAI46_18030 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.69 IAI46_04950 2-dehydropantoate 2-reductase low > 86
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0274 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.63 EX28DRAFT_2546 2-dehydropantoate 2-reductase low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03265 50S ribosomal protein L3 glutamine methyltransferase 0.63 MPMX20_01016 2-dehydropantoate 2-reductase low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS20440 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.63 BWI76_RS06405 2-dehydropantoate 2-reductase low > 92
Rahnella sp. WP5 0.84 EX31_RS19690 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.63 EX31_RS22180 2-dehydropantoate 2-reductase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.55 GFF4336 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 78
Escherichia fergusonii Becca 0.82 EFB2_01528 50S ribosomal protein L3 glutamine methyltransferase 0.63 EFB2_03632 2-dehydropantoate 2-reductase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_01375 50S ribosomal protein L3 glutamine methyltransferase 0.62 OHPLBJKB_03251 2-dehydropantoate 2-reductase low > 73
Escherichia coli BW25113 0.82 b2330 yfcB putative adenine-specific methylase (VIMSS) 0.63 b0425 panE 2-dehydropantoate 2-reductase (NCBI) low > 76
Escherichia coli ECRC100 0.82 OKFHMN_22610 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 OKFHMN_08395 panE 2-dehydropantoate 2-reductase low > 80
Escherichia coli ECRC99 0.82 KEDOAH_05585 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 KEDOAH_19570 panE 2-dehydropantoate 2-reductase
Escherichia coli ECRC98 0.82 JDDGAC_26570 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 JDDGAC_12050 panE 2-dehydropantoate 2-reductase low > 86
Escherichia coli ECRC101 0.82 MCAODC_13650 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 MCAODC_27620 panE 2-dehydropantoate 2-reductase low > 87
Escherichia coli ECRC102 0.82 NIAGMN_20385 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 NIAGMN_06450 panE 2-dehydropantoate 2-reductase
Escherichia coli Nissle 1917 0.82 ECOLIN_RS13495 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.63 ECOLIN_RS02560 2-dehydropantoate 2-reductase low > 55
Erwinia tracheiphila SCR3 0.82 LU632_RS07770 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.58 LU632_RS18455 panE 2-dehydropantoate 2-reductase low > 74
Escherichia coli ECOR38 0.82 HEPCGN_21815 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.63 HEPCGN_07025 panE 2-dehydropantoate 2-reductase low > 87
Escherichia coli BL21 0.82 ECD_02255 N5-glutamine methyltransferase 0.63 ECD_00373 2-dehydropantoate reductase, NADPH-specific low > 61
Escherichia coli ECRC62 0.82 BNILDI_13165 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 BNILDI_22760 panE 2-dehydropantoate 2-reductase low > 75
Pantoea sp. MT58 0.82 IAI47_06145 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 IAI47_14715 2-dehydropantoate 2-reductase low > 76
Escherichia coli ECOR27 0.81 NOLOHH_14245 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 NOLOHH_01345 panE 2-dehydropantoate 2-reductase low > 75
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_10570 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.34 CSW01_11730 2-dehydropantoate 2-reductase low > 62
Shewanella loihica PV-4 0.64 Shew_2417 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.21 Shew_2895 2-dehydropantoate 2-reductase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.63 Sama_2160 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.22 Sama_2559 2-dehydropantoate 2-reductase (RefSeq)
Shewanella sp. ANA-3 0.63 Shewana3_1468 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.25 Shewana3_0780 2-dehydropantoate 2-reductase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.60 SO3080 hemK family protein (NCBI ptt file) 0.24 SO3817 panE 2-dehydropantoate 2-reductase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_01228 50S ribosomal protein L3 glutamine methyltransferase 0.20 MIT1002_01217 2-dehydropantoate 2-reductase low > 70
Pseudomonas sp. S08-1 0.56 OH686_00665 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.24 OH686_08220 2-dehydropantoate 2-reductase low > 80
Pseudomonas stutzeri RCH2 0.55 Psest_1995 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.25 Psest_1140 2-dehydropantoate 2-reductase low > 67
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_5819 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.21 Pf6N2E2_5521 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 103
Pseudomonas sp. RS175 0.54 PFR28_03129 50S ribosomal protein L3 glutamine methyltransferase 0.20 PFR28_03426 2-dehydropantoate 2-reductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_19525 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.21 AO356_17955 2-dehydropantoate 2-reductase low > 104
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_3777 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.21 Pf1N1B4_651 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 87
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_02265 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.21 AO353_03645 2-dehydropantoate 2-reductase low > 101
Pseudomonas fluorescens SBW25 0.53 PFLU_RS21295 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.21 PFLU_RS24155 putative 2-dehydropantoate 2-reductase low > 109
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.19 Psyr_4088 ketopantoate reductase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.19 Psyr_4088 ketopantoate reductase low > 86
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS21295 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.21 PFLU_RS24155 putative 2-dehydropantoate 2-reductase low > 109
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4168 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.21 PfGW456L13_1839 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 87
Marinobacter adhaerens HP15 0.53 HP15_1839 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.19 HP15_1312 2-dehydropantoate 2-reductase low > 73
Pseudomonas putida KT2440 0.53 PP_1827 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.20 PP_1351 putative 2-dehydropantoate 2-reductase low > 96
Pseudomonas simiae WCS417 0.53 PS417_19330 SAM-dependent methyltransferase 0.21 PS417_22515 2-dehydropantoate 2-reductase
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01515 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.10 LRK55_RS02820 2-dehydropantoate 2-reductase low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01735 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.10 LRK54_RS03070 2-dehydropantoate 2-reductase low > 59
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_04795 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.09 OKGIIK_09940 panE 2-dehydropantoate 2-reductase low > 52
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS10785 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.14 HSERO_RS09230 2-dehydropantoate 2-reductase low > 78
Paraburkholderia graminis OAS925 0.42 ABIE53_002520 ribosomal protein L3 glutamine methyltransferase 0.09 ABIE53_004184 2-dehydropantoate 2-reductase low > 113
Ralstonia solanacearum GMI1000 0.41 RS_RS06960 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.08 RS_RS00860 2-dehydropantoate 2-reductase low > 80
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11740 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.12 ABZR87_RS15450 2-dehydropantoate 2-reductase low > 80
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12205 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.10 BPHYT_RS21975 2-dehydropantoate 2-reductase low > 109
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS11955 SAM-dependent methyltransferase 0.13 RR42_RS32960 2-dehydropantoate 2-reductase low > 128
Variovorax sp. SCN45 0.36 GFF258 Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) 0.12 GFF3590 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 127
Variovorax sp. OAS795 0.35 ABID97_RS16650 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.14 ABID97_RS24580 2-dehydropantoate 2-reductase low > 91

Not shown: 17 genomes with orthologs for HER17_RS06930 only; 4 genomes with orthologs for HER17_RS15910 only