Conservation of cofitness between HER17_RS06010 and HER17_RS14880 in Pectobacterium carotovorum WPP14

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 1.0 HER17_RS14880 Tol-Pal system protein TolQ 0.67 19
Dickeya dadantii 3937 0.95 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.93 DDA3937_RS06500 Tol-Pal system protein TolQ — —
Dickeya dianthicola ME23 0.94 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.92 DZA65_RS06895 Tol-Pal system protein TolQ low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.92 HGI48_RS06545 Tol-Pal system protein TolQ — —
Serratia liquefaciens MT49 0.92 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.94 IAI46_06320 Tol-Pal system protein TolQ — —
Rahnella sp. WP5 0.88 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.91 EX31_RS23480 Tol-Pal system protein TolQ low > 89
Erwinia tracheiphila SCR3 0.86 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.91 LU632_RS16045 tolQ Tol-Pal system protein TolQ — —
Pantoea sp. MT58 0.82 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.90 IAI47_13700 Tol-Pal system protein TolQ low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2436 Iron-sulfur cluster regulator IscR 0.86 GFF4651 MotA/TolQ/ExbB proton channel family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.86 OHPLBJKB_02976 Protein TolQ low > 73
Enterobacter sp. TBS_079 0.71 MPMX20_03412 HTH-type transcriptional regulator IscR 0.91 MPMX20_01366 Tol-Pal system protein TolQ low > 85
Escherichia fergusonii Becca 0.71 EFB2_01359 HTH-type transcriptional regulator IscR 0.86 EFB2_03369 Tol-Pal system protein TolQ low > 86
Escherichia coli ECRC62 0.71 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 BNILDI_21250 tolQ Tol-Pal system protein TolQ low > 75
Escherichia coli ECRC102 0.71 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 NIAGMN_04870 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECRC98 0.71 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 JDDGAC_10475 tolQ Tol-Pal system protein TolQ low > 86
Escherichia coli ECRC101 0.71 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 MCAODC_26040 tolQ Tol-Pal system protein TolQ low > 87
Escherichia coli ECRC100 0.71 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 OKFHMN_06820 tolQ Tol-Pal system protein TolQ — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.86 ECOLIN_RS03925 Tol-Pal system protein TolQ low > 55
Escherichia coli BL21 0.71 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.86 ECD_00697 membrane spanning protein in TolA-TolQ-TolR complex — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.91 EX28DRAFT_2254 TolQ protein — —
Escherichia coli ECOR27 0.71 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 NOLOHH_23255 tolQ Tol-Pal system protein TolQ — —
Escherichia coli BW25113 0.71 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.86 b0737 tolQ membrane spanning protein in TolA-TolQ-TolR complex (NCBI) low > 76
Escherichia coli ECOR38 0.71 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 HEPCGN_01450 tolQ Tol-Pal system protein TolQ low > 87
Escherichia coli ECRC99 0.71 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 KEDOAH_21145 tolQ Tol-Pal system protein TolQ — —
Alteromonas macleodii MIT1002 0.70 MIT1002_02802 HTH-type transcriptional regulator IscR 0.57 MIT1002_01335 Biopolymer transport protein ExbB — —
Klebsiella michiganensis M5al 0.70 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.91 BWI76_RS08520 colicin transporter TolQ low > 92
Shewanella loihica PV-4 0.66 Shew_2318 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.64 Shew_1524 MotA/TolQ/ExbB proton channel (RefSeq) — —
Shewanella amazonensis SB2B 0.66 Sama_1292 Rrf2 family protein (RefSeq) 0.54 Sama_2089 MotA/TolQ/ExbB proton channel (RefSeq) — —
Shewanella sp. ANA-3 0.65 Shewana3_2281 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.63 Shewana3_2534 MotA/TolQ/ExbB proton channel (RefSeq) — —
Shewanella oneidensis MR-1 0.65 SO2263 Rrf2 family protein (NCBI ptt file) 0.61 SO2751 MotA/TolQ/ExbB proton channel family protein (NCBI ptt file) — —
Pseudomonas sp. S08-1 0.61 OH686_17470 iron-sulfur cluster assembly transcription factor IscR 0.55 OH686_19145 protein TolQ — —
Pseudomonas sp. RS175 0.61 PFR28_00285 HTH-type transcriptional regulator IscR 0.54 PFR28_03410 Tol-Pal system protein TolQ — —
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_06650 transcriptional regulator 0.54 AO356_18035 protein TolQ — —
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_15830 transcriptional regulator 0.55 AO353_03570 protein TolQ — —
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.54 Psyr_1412 Cell division and transport-associated protein TolQ — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.54 Psyr_1412 Cell division and transport-associated protein TolQ — —
Pseudomonas stutzeri RCH2 0.60 Psest_1250 iron-sulfur cluster assembly transcription factor IscR 0.54 Psest_1499 TolQ protein — —
Pseudomonas putida KT2440 0.59 PP_0841 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR 0.53 PP_1219 subunit of a proton-driven complex used for maintenance of outer membrane stability — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.54 PFLU_RS24075 protein TolQ — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.54 PFLU_RS24075 protein TolQ — —
Pseudomonas simiae WCS417 0.59 PS417_23205 transcriptional regulator 0.54 PS417_22435 protein tolQ — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1458 transcriptional regulator, BadM/Rrf2 family 0.59 B158DRAFT_1138 Cell division and transport-associated protein TolQ (TC 2.C.1.2.1) — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_866 Iron-sulfur cluster regulator IscR 0.55 Pf1N1B4_635 MotA/TolQ/ExbB proton channel family protein — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4874 Iron-sulfur cluster regulator IscR 0.55 PfGW456L13_1855 MotA/TolQ/ExbB proton channel family protein — —
Acinetobacter radioresistens SK82 0.50 MPMX26_01328 HTH-type transcriptional regulator IscR 0.41 MPMX26_02191 Tol-Pal system protein TolQ low > 36
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS15775 DNA-binding protein 0.42 HSERO_RS06125 protein tolQ — —
Marinobacter adhaerens HP15 0.49 HP15_1487 transcriptional regulator, BadM/Rrf2 family 0.48 HP15_2038 MotA/TolQ/ExbB proton channel — —
Dechlorosoma suillum PS 0.48 Dsui_2369 iron-sulfur cluster assembly transcription factor IscR 0.47 Dsui_0482 TolQ protein — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS05100 Fe-S cluster assembly transcriptional regulator IscR 0.44 ABCV34_RS09835 protein TolQ — —
Azospirillum sp. SherDot2 0.44 MPMX19_01654 HTH-type transcriptional regulator IscR 0.37 MPMX19_00700 Tol-Pal system protein TolQ — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS05830 Rrf2 family transcriptional regulator 0.36 AZOBR_RS09060 biopolymer transporter ExbB — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS15265 Rrf2 family transcriptional regulator 0.37 AMB_RS16235 protein TolQ — —
Dinoroseobacter shibae DFL-12 0.35 Dshi_1633 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.30 Dshi_1108 Tol-Pal system TolQ (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c15350 putative transcriptional regulator 0.37 PGA1_c05900 protein TolQ — —
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.31 DvMF_2364 protein TolQ (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0529 rrf2 Rrf2 protein (voordouw) 0.29 DVU3099 tolQ-2 tolQ protein (TIGR) — —
Sinorhizobium meliloti 1021 0.22 SM_b20994 hypothetical protein 0.39 SMc03958 transport transmembrane protein — —
Fusobacterium nucleatum SB010 0.22 HUW76_04175 Rrf2 family transcriptional regulator 0.18 HUW76_03680 MotA/TolQ/ExbB proton channel family protein low > 35
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_1470 transcriptional regulator, BadM/Rrf2 family 0.32 Ga0059261_3160 TolQ protein — —

Not shown: 4 genomes with orthologs for HER17_RS06010 only; 33 genomes with orthologs for HER17_RS14880 only