Conservation of cofitness between HER17_RS02810 and HER17_RS11210 in Pectobacterium carotovorum WPP14

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02810 peroxide stress protein YaaA 1.0 HER17_RS11210 SpoVR family protein 0.85 14
Dickeya dadantii 3937 0.84 DDA3937_RS18400 peroxide stress protein YaaA 0.91 DDA3937_RS11175 SpoVR family protein low > 74
Dickeya dianthicola ME23 0.82 DZA65_RS19470 peroxide stress protein YaaA 0.91 DZA65_RS11545 SpoVR family protein low > 75
Escherichia coli Nissle 1917 0.82 ECOLIN_RS00035 peroxide stress protein YaaA 0.86 ECOLIN_RS07180 SpoVR family protein low > 55
Escherichia fergusonii Becca 0.82 EFB2_04037 Peroxide stress resistance protein YaaA 0.86 EFB2_02744 hypothetical protein low > 86
Escherichia coli ECOR38 0.82 HEPCGN_09095 yaaA peroxide stress protein YaaA 0.86 HEPCGN_24745 ycgB SpoVR family protein low > 87
Enterobacter sp. TBS_079 0.82 MPMX20_00714 Peroxide stress resistance protein YaaA 0.86 MPMX20_02700 hypothetical protein low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03654 hypothetical protein 0.86 OHPLBJKB_02501 hypothetical protein low > 73
Escherichia coli ECRC98 0.82 JDDGAC_14685 yaaA peroxide stress protein YaaA 0.86 JDDGAC_06225 ycgB SpoVR family protein 0.64 14
Escherichia coli ECRC102 0.82 NIAGMN_08940 yaaA peroxide stress protein YaaA 0.86 NIAGMN_27935 ycgB SpoVR family protein — —
Escherichia coli ECRC101 0.82 MCAODC_01605 yaaA peroxide stress protein YaaA 0.86 MCAODC_21885 ycgB SpoVR family protein low > 87
Dickeya dianthicola 67-19 0.82 HGI48_RS18330 peroxide stress protein YaaA 0.91 HGI48_RS11200 SpoVR family protein low > 71
Escherichia coli BL21 0.82 ECD_00006 peroxide resistance protein, lowers intracellular iron 0.86 ECD_01163 SpoVR family stationary phase protein low > 61
Escherichia coli ECRC99 0.82 KEDOAH_17065 yaaA peroxide stress protein YaaA 0.86 KEDOAH_25300 ycgB SpoVR family protein — —
Escherichia coli ECRC100 0.82 OKFHMN_11090 yaaA peroxide stress protein YaaA 0.86 OKFHMN_28285 ycgB SpoVR family protein low > 80
Enterobacter asburiae PDN3 0.81 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria 0.86 EX28DRAFT_0765 Uncharacterized conserved protein low > 76
Escherichia coli ECRC62 0.81 BNILDI_08185 yaaA peroxide stress protein YaaA 0.86 BNILDI_18895 ycgB SpoVR family protein low > 75
Escherichia coli BW25113 0.81 b0006 yaaA hypothetical protein (NCBI) 0.86 b1188 ycgB ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli ECOR27 0.81 NOLOHH_03420 yaaA peroxide stress protein YaaA 0.86 NOLOHH_20730 ycgB SpoVR family protein low > 75
Serratia liquefaciens MT49 0.80 IAI46_03045 peroxide stress protein YaaA 0.89 IAI46_14470 SpoVR family protein low > 86
Klebsiella michiganensis M5al 0.80 BWI76_RS04260 peroxide stress protein YaaA 0.86 BWI76_RS17740 SpoVR family protein low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1081 UPF0246 protein YaaA 0.87 GFF2805 FIG004684: SpoVR-like protein 0.49 59
Pantoea sp. MT58 0.79 IAI47_16200 peroxide stress protein YaaA 0.86 IAI47_08885 SpoVR family protein low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02625 yaaA peroxide stress protein YaaA 0.85 LU632_RS13075 SpoVR family protein low > 74
Rahnella sp. WP5 0.76 EX31_RS03930 peroxide stress protein YaaA 0.87 EX31_RS10500 SpoVR family protein low > 89
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11930 peroxide stress protein YaaA 0.77 CSW01_09390 SpoVR family protein low > 62
Marinobacter adhaerens HP15 0.69 HP15_1223 protein YaaA 0.69 HP15_2935 SpoVR family protein low > 73
Pseudomonas putida KT2440 0.67 PP_1289 conserved protein of unknown function, DUF328 family 0.67 PP_0395 putative type IV piliation protein low > 96
Pseudomonas sp. RS175 0.67 PFR28_03554 Peroxide stress resistance protein YaaA 0.69 PFR28_04070 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_17320 hypothetical protein 0.69 AO356_14305 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 104
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_04675 hypothetical protein 0.67 AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_1686 UPF0246 protein YaaA 0.68 PfGW456L13_1194 FIG004684: SpoVR-like protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_981 UPF0246 protein YaaA 0.67 Pf1N1B4_2521 FIG004684: SpoVR-like protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_5389 UPF0246 protein YaaA 0.67 Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1064 Protein of unknown function DUF328 0.69 Psyr_4633 SpoVR low > 86
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1064 Protein of unknown function DUF328 0.69 Psyr_4633 SpoVR low > 86
Pseudomonas simiae WCS417 0.65 PS417_04850 hypothetical protein 0.68 PS417_25840 SpoVR family protein low > 88
Pseudomonas stutzeri RCH2 0.64 Psest_3173 Uncharacterized protein conserved in bacteria 0.69 Psest_3674 Uncharacterized conserved protein low > 67
Shewanella loihica PV-4 0.64 Shew_1093 hypothetical protein (RefSeq) 0.74 Shew_1831 hypothetical protein (RefSeq) low > 60
Pseudomonas sp. S08-1 0.64 OH686_07085 UPF0246 protein YaaA 0.69 OH686_15010 SpoVR-like protein low > 80
Pseudomonas fluorescens SBW25 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.68 PFLU_RS27495 SpoVR family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.68 PFLU_RS27495 SpoVR family protein low > 109
Shewanella amazonensis SB2B 0.63 Sama_0917 hypothetical protein (RefSeq) 0.74 Sama_1923 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 62
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14635 peroxide stress protein YaaA 0.64 ABZR87_RS14210 SpoVR family protein low > 80
Alteromonas macleodii MIT1002 0.60 MIT1002_03077 hypothetical protein 0.74 MIT1002_01231 SpoVR family protein low > 70
Paraburkholderia graminis OAS925 0.58 ABIE53_001622 cytoplasmic iron level regulating protein YaaA (DUF328/UPF0246 family) 0.66 ABIE53_002316 stage V sporulation protein R low > 113
Shewanella sp. ANA-3 0.58 Shewana3_3143 hypothetical protein (RefSeq) 0.74 Shewana3_1636 SpoVR family protein (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04599 hypothetical protein 0.66 H281DRAFT_05234 Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation low > 103
Shewanella oneidensis MR-1 0.57 SO3540 conserved hypothetical protein (NCBI ptt file) 0.74 SO2884 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS06780 hypothetical protein 0.66 BPHYT_RS11180 SpoVR family protein low > 109
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS24000 peroxide stress protein YaaA 0.66 QEN71_RS07385 SpoVR family protein low > 153
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS05780 hypothetical protein 0.65 RR42_RS36475 SpoVR family protein 0.25 117
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1593 UPF0246 protein YaaA 0.63 Ac3H11_1147 FIG004684: SpoVR-like protein low > 79
Variovorax sp. SCN45 0.48 GFF6020 UPF0246 protein YaaA 0.66 GFF2935 FIG004684: SpoVR-like protein low > 127
Castellaniella sp019104865 MT123 0.47 ABCV34_RS01170 peroxide stress protein YaaA 0.14 ABCV34_RS05550 SpoVR family protein low > 48
Phaeobacter inhibens DSM 17395 0.43 PGA1_c31890 Uncharacterized protein conserved in bacteria 0.51 PGA1_c02490 sporulation protein R-like protein low > 62

Not shown: 19 genomes with orthologs for HER17_RS02810 only; 7 genomes with orthologs for HER17_RS11210 only