Conservation of cofitness between HER17_RS02805 and HER17_RS10870 in Pectobacterium carotovorum WPP14

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02805 threonine synthase 1.0 HER17_RS10870 HTH-type transcriptional regulator CysB 0.94 11
Dickeya dadantii 3937 0.88 DDA3937_RS18405 threonine synthase 0.95 DDA3937_RS10540 HTH-type transcriptional regulator CysB low > 74
Dickeya dianthicola ME23 0.87 DZA65_RS19475 threonine synthase 0.95 DZA65_RS11020 HTH-type transcriptional regulator CysB low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS18335 threonine synthase 0.95 HGI48_RS10540 HTH-type transcriptional regulator CysB low > 71
Rahnella sp. WP5 0.86 EX31_RS03935 threonine synthase 0.93 EX31_RS09890 HTH-type transcriptional regulator CysB 0.96 32
Serratia liquefaciens MT49 0.86 IAI46_03040 threonine synthase 0.93 IAI46_13965 HTH-type transcriptional regulator CysB — —
Pantoea sp. MT58 0.83 IAI47_16205 threonine synthase 0.90 IAI47_09240 HTH-type transcriptional regulator CysB low > 76
Erwinia tracheiphila SCR3 0.82 LU632_RS02620 thrC threonine synthase 0.92 LU632_RS12550 cysB HTH-type transcriptional regulator CysB — —
Enterobacter asburiae PDN3 0.82 EX28DRAFT_3616 threonine synthase 0.91 EX28DRAFT_0946 Transcriptional regulator — —
Enterobacter sp. TBS_079 0.82 MPMX20_00712 Threonine synthase 0.91 MPMX20_02501 HTH-type transcriptional regulator CysB — —
Klebsiella michiganensis M5al 0.81 BWI76_RS04255 threonine synthase 0.92 BWI76_RS11930 LysR family transcriptional regulator CysB — —
Escherichia coli ECOR27 0.79 NOLOHH_03430 thrC threonine synthase 0.91 NOLOHH_20265 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECOR38 0.79 HEPCGN_09105 thrC threonine synthase 0.91 HEPCGN_25600 cysB HTH-type transcriptional regulator CysB low > 87
Escherichia coli ECRC100 0.79 OKFHMN_11100 thrC threonine synthase 0.91 OKFHMN_02600 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC98 0.79 JDDGAC_14695 thrC threonine synthase 0.91 JDDGAC_05145 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC101 0.79 MCAODC_01615 thrC threonine synthase 0.91 MCAODC_15665 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC62 0.79 BNILDI_08170 thrC threonine synthase 0.91 BNILDI_18415 cysB HTH-type transcriptional regulator CysB — —
Escherichia fergusonii Becca 0.79 EFB2_04039 Threonine synthase 0.91 EFB2_02652 HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC102 0.79 NIAGMN_08950 thrC threonine synthase 0.91 NIAGMN_26770 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC99 0.79 KEDOAH_17055 thrC threonine synthase 0.91 KEDOAH_26165 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli BL21 0.79 ECD_00004 L-threonine synthase 0.91 ECD_01251 N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_03656 Threonine synthase 0.91 OHPLBJKB_02409 HTH-type transcriptional regulator CysB low > 73
Escherichia coli BW25113 0.79 b0004 thrC threonine synthase (NCBI) 0.91 b1275 cysB DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding (NCBI) — —
Escherichia coli Nissle 1917 0.79 ECOLIN_RS00020 threonine synthase 0.91 ECOLIN_RS07680 HTH-type transcriptional regulator CysB low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1080 Threonine synthase (EC 4.2.3.1) 0.91 GFF2712 Cys regulon transcriptional activator CysB — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11965 threonine synthase 0.80 CSW01_09545 HTH-type transcriptional regulator CysB — —
Alteromonas macleodii MIT1002 0.62 MIT1002_03084 Threonine synthase 0.78 MIT1002_02005 Cys regulon transcriptional activator — —
Shewanella loihica PV-4 0.58 Shew_1081 threonine synthase (RefSeq) 0.75 Shew_1624 cysB transcriptional regulator CysB (RefSeq) — —
Shewanella sp. ANA-3 0.55 Shewana3_1141 threonine synthase (RefSeq) 0.75 Shewana3_1731 cysB transcriptional regulator CysB (RefSeq) — —
Shewanella oneidensis MR-1 0.55 SO3413 thrC threonine synthase (NCBI ptt file) 0.75 SO2649 cysB cys regulon transcriptional activator (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.55 Sama_0907 threonine synthase (RefSeq) 0.75 Sama_1324 cysB transcriptional regulator CysB (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS18960 threonine synthase 0.16 ABZR88_RS05415 LysR substrate-binding domain-containing protein — —
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.30 Xcc-8004.1249.1 Transcriptional regulator low > 74
Lysobacter sp. OAE881 0.29 ABIE51_RS17530 threonine synthase 0.34 ABIE51_RS15850 LysR family transcriptional regulator 0.93 40
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04350 threonine synthase 0.67 AO353_19060 CysB family transcriptional regulator — —
Pseudomonas putida KT2440 0.28 PP_1471 Threonine synthase 0.68 PP_2327 transcriptional dual regulator / CysB-O-acetyl-L-serine — —
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_06370 threonine synthase 0.67 AO356_03180 CysB family transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1) 0.67 Pf6N2E2_2465 Cys regulon transcriptional activator CysB — —
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1291 L-threonine synthase 0.66 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1291 L-threonine synthase 0.66 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein — —
Rhodanobacter denitrificans MT42 0.28 LRK55_RS09995 threonine synthase 0.36 LRK55_RS00690 LysR substrate-binding domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS10355 threonine synthase 0.36 LRK54_RS00915 LysR substrate-binding domain-containing protein low > 59
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1) 0.67 Pf1N1B4_283 Cys regulon transcriptional activator CysB — —
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1) 0.68 PfGW456L13_2230 Cys regulon transcriptional activator CysB — —
Pseudomonas sp. S08-1 0.28 OH686_17765 threonine synthase 0.67 OH686_01730 Cys regulon transcriptional activator CysB low > 80
Pseudomonas simiae WCS417 0.28 PS417_22880 threonine synthase 0.68 PS417_08460 CysB family transcriptional regulator — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24545 threonine synthase 0.67 PFLU_RS08410 HTH-type transcriptional regulator CysB — —
Pseudomonas sp. RS175 0.27 PFR28_00334 Threonine synthase 0.67 PFR28_00966 HTH-type transcriptional regulator CysB — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24545 threonine synthase 0.67 PFLU_RS08410 HTH-type transcriptional regulator CysB low > 109
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) 0.35 ABZR86_RS05885 LysR substrate-binding domain-containing protein 0.95 26
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_13570 thrC threonine synthase 0.37 OKGIIK_05975 lysR CysB family transcriptional regulator low > 52
Pseudomonas stutzeri RCH2 0.27 Psest_3125 threonine synthase 0.66 Psest_2329 Transcriptional regulator — —
Marinobacter adhaerens HP15 0.25 HP15_765 threonine synthase 0.68 HP15_1854 transcriptional regulator, LysR family — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS02300 threonine synthase 0.40 ABCV34_RS08230 CysB family HTH-type transcriptional regulator — —
Dechlorosoma suillum PS 0.23 Dsui_2904 threonine synthase 0.52 Dsui_1988 transcriptional regulator — —
Variovorax sp. OAS795 0.22 ABID97_RS25760 threonine synthase 0.43 ABID97_RS16600 CysB family HTH-type transcriptional regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF3936 Threonine synthase (EC 4.2.3.1) 0.46 GFF5044 Alkanesulfonate utilization operon LysR-family regulator CbI — —
Variovorax sp. SCN45 0.21 GFF2800 Threonine synthase (EC 4.2.3.1) 0.43 GFF244 Cys regulon transcriptional activator CysB — —
Acidovorax sp. GW101-3H11 0.21 Ac3H11_1505 Threonine synthase (EC 4.2.3.1) 0.40 Ac3H11_2403 Alkanesulfonate utilization operon LysR-family regulator CbI — —

Not shown: 35 genomes with orthologs for HER17_RS02805 only; 1 genomes with orthologs for HER17_RS10870 only