Conservation of cofitness between HER17_RS08615 and HER17_RS08550 in Pectobacterium carotovorum WPP14

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS08550 glucan biosynthesis protein G 0.86 2
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.82 EX31_RS24250 glucan biosynthesis protein G low > 89
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.88 HGI48_RS13280 glucan biosynthesis protein G low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.88 DZA65_RS13755 glucan biosynthesis protein G low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.88 DDA3937_RS13220 glucan biosynthesis protein G low > 74
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 IAI46_09605 glucan biosynthesis protein G low > 86
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.80 BWI76_RS10930 glucan biosynthesis protein G low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.82 GFF3328 Glucans biosynthesis protein G precursor 0.79 49
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.80 EX28DRAFT_1882 Periplasmic glucans biosynthesis protein low > 76
Pantoea sp. MT58 0.82 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 IAI47_12280 glucan biosynthesis protein G low > 76
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.81 ECD_01045 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase low > 61
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 JDDGAC_07460 mdoG glucans biosynthesis protein MdoG low > 86
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 OKFHMN_03800 mdoG glucans biosynthesis protein MdoG low > 80
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 HEPCGN_23690 mdoG glucans biosynthesis protein MdoG 0.93 25
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.81 OHPLBJKB_02616 Glucans biosynthesis protein G low > 73
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 KEDOAH_23955 mdoG glucans biosynthesis protein MdoG — —
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 NOLOHH_21330 mdoG glucans biosynthesis protein MdoG low > 75
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 MCAODC_23160 mdoG glucans biosynthesis protein MdoG low > 87
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.81 EFB2_02925 Glucans biosynthesis protein G 0.53 67
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 BNILDI_19490 mdoG glucans biosynthesis protein MdoG low > 75
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 NIAGMN_24030 mdoG glucans biosynthesis protein MdoG — —
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.81 b1048 mdoG glucan biosynthesis protein, periplasmic (NCBI) low > 76
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 ECOLIN_RS06090 glucans biosynthesis protein MdoG — —
Enterobacter sp. TBS_079 0.80 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.80 MPMX20_01729 Glucans biosynthesis protein G low > 85
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 LU632_RS10270 glucan biosynthesis protein G low > 74
Shewanella sp. ANA-3 0.64 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.35 Shewana3_0889 mdoD glucan biosynthesis protein D (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.33 CSW01_06510 glucan biosynthesis protein G low > 62
Shewanella amazonensis SB2B 0.62 Sama_1988 pseudouridylate synthase (RefSeq) 0.33 Sama_1691 mdoG glucan biosynthesis protein G (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.61 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.31 MIT1002_03996 Glucans biosynthesis protein G precursor low > 70
Pseudomonas stutzeri RCH2 0.57 Psest_1680 pseudouridine synthase, RluA family 0.72 Psest_1576 Periplasmic glucans biosynthesis protein — —
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.74 Pf6N2E2_3792 Glucans biosynthesis protein G precursor 0.47 2
Pseudomonas sp. RS175 0.56 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.75 PFR28_04978 Glucans biosynthesis protein G low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_20125 23S rRNA pseudouridylate synthase 0.75 AO356_09565 glucan biosynthesis protein G low > 104
Pseudomonas putida KT2440 0.55 PP_1906 ribosomal large subunit pseudouridine synthase C 0.73 PP_5026 Glucans biosynthesis protein G low > 96
Pseudomonas simiae WCS417 0.55 PS417_21480 23S rRNA pseudouridylate synthase 0.72 PS417_01790 glucan biosynthesis protein G low > 88
Pseudomonas fluorescens SBW25 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.72 PFLU_RS01835 glucan biosynthesis protein G low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.72 PFLU_RS01835 glucan biosynthesis protein G 0.25 73
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_01405 23S rRNA pseudouridylate synthase 0.73 AO353_12310 glucan biosynthesis protein G low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.73 Pf1N1B4_1573 Glucans biosynthesis protein G precursor — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.74 PfGW456L13_311 Glucans biosynthesis protein G precursor 0.41 20
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.36 HP15_1934 periplasmic glucan biosynthesis protein MdoG low > 73
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.59 HSERO_RS23935 glucan biosynthesis protein D low > 78
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS14375 RluA family pseudouridine synthase 0.53 RALBFv3_RS06615 glucan biosynthesis protein D low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS11840 RluA family pseudouridine synthase 0.53 UW163_RS07010 glucan biosynthesis protein D — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS14155 pseudouridine synthase 0.63 RR42_RS26855 glucan biosynthesis protein G low > 128
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10090 RluA family pseudouridine synthase 0.53 ABZR87_RS02285 glucan biosynthesis protein G low > 80
Ralstonia solanacearum GMI1000 0.45 RS_RS05155 RluA family pseudouridine synthase 0.53 RS_RS14565 glucan biosynthesis protein D low > 80
Ralstonia solanacearum PSI07 0.45 RPSI07_RS19085 RluA family pseudouridine synthase 0.54 RPSI07_RS10610 glucan biosynthesis protein D low > 81
Variovorax sp. SCN45 0.45 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.29 GFF6448 Glucans biosynthesis protein D precursor low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.44 GFF609 Glucans biosynthesis protein G precursor low > 90
Variovorax sp. OAS795 0.44 ABID97_RS08250 RluA family pseudouridine synthase 0.28 ABID97_RS19495 glucan biosynthesis protein D low > 91
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.43 Ac3H11_4012 Glucans biosynthesis protein G precursor low > 79
Lysobacter sp. OAE881 0.41 ABIE51_RS11800 RluA family pseudouridine synthase 0.36 ABIE51_RS14245 glucan biosynthesis protein G low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.32 Xcc-8004.5275.1 Glucans biosynthesis protein D precursor low > 74
Phaeobacter inhibens DSM 17395 0.27 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.31 PGA1_c12310 glucans biosynthesis protein G — —
Rhodospirillum rubrum S1H 0.24 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.34 Rru_A2135 Twin-arginine translocation pathway signal (NCBI) — —
Dinoroseobacter shibae DFL-12 0.23 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.25 Dshi_4171 periplasmic glucan biosynthesis protein MdoG (RefSeq) low > 64

Not shown: 26 genomes with orthologs for HER17_RS08615 only; 3 genomes with orthologs for HER17_RS08550 only