Conservation of cofitness between HEPCGN_08480 and HEPCGN_21870 in Escherichia coli ECOR38

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_08480 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.0 HEPCGN_21870 usg aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC102 1.00 NIAGMN_08350 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 NIAGMN_20440 usg aspartate-semialdehyde dehydrogenase
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03547 Pyruvate dehydrogenase E1 component 1.00 OHPLBJKB_01386 USG-1 protein
Escherichia coli ECRC98 1.00 JDDGAC_14095 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 JDDGAC_26625 usg aspartate-semialdehyde dehydrogenase
Escherichia coli ECRC62 1.00 BNILDI_08765 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 BNILDI_13220 usg aspartate-semialdehyde dehydrogenase low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS00640 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 ECOLIN_RS13440 aspartate-semialdehyde dehydrogenase low > 55
Escherichia coli ECRC100 1.00 OKFHMN_10500 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 OKFHMN_22665 usg aspartate-semialdehyde dehydrogenase
Escherichia coli ECOR27 1.00 NOLOHH_02845 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 NOLOHH_14300 usg aspartate-semialdehyde dehydrogenase low > 75
Escherichia coli BW25113 1.00 b0114 aceE pyruvate dehydrogenase subunit E1 (NCBI) 1.00 b2319 usg hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 1.00 MCAODC_01015 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 MCAODC_13705 usg aspartate-semialdehyde dehydrogenase
Escherichia coli ECRC99 1.00 KEDOAH_17655 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 KEDOAH_05530 usg aspartate-semialdehyde dehydrogenase
Escherichia fergusonii Becca 1.00 EFB2_03931 Pyruvate dehydrogenase E1 component 1.00 EFB2_01539 USG-1 protein low > 86
Escherichia coli BL21 1.00 ECD_00113 pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding 1.00 ECD_02244 putative semialdehyde dehydrogenase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF122 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.92 GFF1935 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS04880 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.89 BWI76_RS20385 aspartate-semialdehyde dehydrogenase
Enterobacter sp. TBS_079 0.95 MPMX20_00807 Pyruvate dehydrogenase E1 component 0.90 MPMX20_03254 USG-1 protein low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3710 pyruvate dehydrogenase E1 component, homodimeric type 0.88 EX28DRAFT_0285 Aspartate-semialdehyde dehydrogenase low > 76
Pectobacterium carotovorum WPP14 0.92 HER17_RS03290 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.69 HER17_RS06985 aspartate-semialdehyde dehydrogenase
Erwinia tracheiphila SCR3 0.92 LU632_RS03080 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.73 LU632_RS07820 aspartate-semialdehyde dehydrogenase
Pantoea sp. MT58 0.92 IAI47_15810 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.70 IAI47_06240 aspartate-semialdehyde dehydrogenase low > 76
Dickeya dadantii 3937 0.91 DDA3937_RS17925 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.73 DDA3937_RS14470 aspartate-semialdehyde dehydrogenase
Dickeya dianthicola ME23 0.91 DZA65_RS19000 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.74 DZA65_RS15375 aspartate-semialdehyde dehydrogenase
Dickeya dianthicola 67-19 0.91 HGI48_RS17850 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.73 HGI48_RS14440 aspartate-semialdehyde dehydrogenase
Rahnella sp. WP5 0.91 EX31_RS03480 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.72 EX31_RS19605 aspartate-semialdehyde dehydrogenase low > 89
Serratia liquefaciens MT49 0.90 IAI46_21325 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.72 IAI46_17845 aspartate-semialdehyde dehydrogenase low > 86
Shewanella amazonensis SB2B 0.74 Sama_0375 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.45 Sama_2152 aspartate-semialdehyde dehydrogenase (RefSeq)
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_12220 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.47 CSW01_10520 Aspartate-semialdehyde dehydrogenase 2
Shewanella sp. ANA-3 0.69 Shewana3_0426 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.46 Shewana3_1477 aspartate semialdehyde dehydrogenase (RefSeq)
Shewanella loihica PV-4 0.69 Shew_3431 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.45 Shew_2308 aspartate-semialdehyde dehydrogenase (RefSeq)
Shewanella oneidensis MR-1 0.69 SO0424 aceE pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) 0.46 SO3070 asd aspartate semialdehyde dehydrogenese (NCBI ptt file)
Alteromonas macleodii MIT1002 0.66 MIT1002_03003 Pyruvate dehydrogenase E1 component 0.42 MIT1002_02531 Aspartate-semialdehyde dehydrogenase 2 low > 70
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2144 pyruvate dehydrogenase E1 component, homodimeric type 0.38 B158DRAFT_1481 aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
Dinoroseobacter shibae DFL-12 0.62 Dshi_1968 2-oxo-acid dehydrogenase E1 subunit, homodimeric type (RefSeq) 0.33 Dshi_3240 aspartate-semialdehyde dehydrogenase (RefSeq)
Pseudomonas putida KT2440 0.60 PP_0339 Pyruvate dehydrogenase E1 component 0.30 PP_1992 aspartate-semialdehyde dehydrogenase low > 96
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_1476 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.33 Pf1N1B4_10 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_214 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.35 PfGW456L13_3943 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_0518 2-oxo-acid dehydrogenase E1 component homodimeric type 0.33 Psyr_1660 Aspartate-semialdehyde dehydrogenase
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_0518 2-oxo-acid dehydrogenase E1 component homodimeric type 0.33 Psyr_1660 Aspartate-semialdehyde dehydrogenase
Pseudomonas stutzeri RCH2 0.60 Psest_0448 pyruvate dehydrogenase E1 component, homodimeric type 0.29 Psest_2587 Aspartate-semialdehyde dehydrogenase
Pseudomonas sp. S08-1 0.60 OH686_09710 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.31 OH686_04460 Aspartate-semialdehyde dehydrogenase low > 80
Pseudomonas sp. RS175 0.60 PFR28_05061 Pyruvate dehydrogenase E1 component 0.36 PFR28_02819 USG-1 protein
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_3674 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.36 Pf6N2E2_68 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_08960 pyruvate dehydrogenase 0.35 AO356_21425 aspartate-semialdehyde dehydrogenase
Pseudomonas fluorescens SBW25 0.60 PFLU_RS02275 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.33 PFLU_RS20555 aspartate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS02275 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.33 PFLU_RS20555 aspartate-semialdehyde dehydrogenase low > 109
Pseudomonas simiae WCS417 0.59 PS417_02220 pyruvate dehydrogenase 0.33 PS417_18575 aspartate-semialdehyde dehydrogenase
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_12865 pyruvate dehydrogenase 0.34 AO353_20645 aspartate-semialdehyde dehydrogenase
Lysobacter sp. OAE881 0.57 ABIE51_RS18795 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.36 ABIE51_RS08235 aspartate-semialdehyde dehydrogenase
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.754.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.35 Xcc-8004.1957.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS12410 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.38 ABZR86_RS08030 aspartate-semialdehyde dehydrogenase
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_12700 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.36 OKGIIK_04815 asd aspartate-semialdehyde dehydrogenase
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS11175 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.37 LRK54_RS01715 aspartate-semialdehyde dehydrogenase
Rhodanobacter denitrificans MT42 0.53 LRK55_RS10880 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.36 LRK55_RS01495 aspartate-semialdehyde dehydrogenase
Mycobacterium tuberculosis H37Rv 0.49 Rv2241 Pyruvate dehydrogenase E1 component AceE (pyruvate decarboxylase) (pyruvate dehydrogenase) (pyruvic dehydrogenase) 0.23 Rv3708c Aspartate-semialdehyde dehydrogenase Asd (ASA dehydrogenase) (ASADH) (aspartic semialdehyde dehydrogenase) (L-aspartate-beta-semialdehyde dehydrogenase)
Bosea sp. OAE506 0.08 ABIE41_RS08425 transketolase 0.32 ABIE41_RS08445 aspartate-semialdehyde dehydrogenase
Caulobacter crescentus NA1000 Δfur 0.07 CCNA_01263 pyruvate dehydrogenase E1 component 0.30 CCNA_00253 aspartate-semialdehyde dehydrogenase low > 67
Caulobacter crescentus NA1000 0.07 CCNA_01263 pyruvate dehydrogenase E1 component 0.30 CCNA_00253 aspartate-semialdehyde dehydrogenase low > 66
Phaeobacter inhibens DSM 17395 0.07 PGA1_c16590 transketolase-like protein 0.33 PGA1_c31480 aspartate-semialdehyde dehydrogenase Asd
Azospirillum sp. SherDot2 0.07 MPMX19_03172 Pyruvate dehydrogenase E1 component 0.34 MPMX19_02000 Aspartate-semialdehyde dehydrogenase 2 low > 112

Not shown: 18 genomes with orthologs for HEPCGN_08480 only; 24 genomes with orthologs for HEPCGN_21870 only