Conservation of cofitness between GFF339 and GFF6513 in Variovorax sp. SCN45

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF339 Exodeoxyribonuclease I (EC 3.1.11.1) 1.0 GFF6513 Phosphogluconate dehydratase (EC 4.2.1.12) 0.53 12
Variovorax sp. OAS795 0.94 ABID97_RS16900 exodeoxyribonuclease I 0.91 ABID97_RS21300 phosphogluconate dehydratase low > 91
Acidovorax sp. GW101-3H11 0.78 Ac3H11_2454 Exodeoxyribonuclease I (EC 3.1.11.1) 0.66 Ac3H11_2082 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS03495 exodeoxyribonuclease I 0.57 ABZR87_RS22920 phosphogluconate dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS07800 exodeoxyribonuclease I 0.57 RALBFv3_RS16385 phosphogluconate dehydratase low > 76
Ralstonia solanacearum UW163 0.66 UW163_RS05825 exodeoxyribonuclease I 0.57 UW163_RS17125 phosphogluconate dehydratase — —
Ralstonia solanacearum PSI07 0.66 RPSI07_RS09480 exodeoxyribonuclease I 0.57 RPSI07_RS07320 phosphogluconate dehydratase — —
Ralstonia solanacearum GMI1000 0.65 RS_RS15700 exodeoxyribonuclease I 0.57 RS_RS24620 phosphogluconate dehydratase low > 80
Marinobacter adhaerens HP15 0.51 HP15_2375 exonuclease I 0.54 HP15_2174 6-phosphogluconate dehydratase — —
Shewanella amazonensis SB2B 0.46 Sama_1973 sbcB exonuclease I (RefSeq) 0.53 Sama_1810 phosphogluconate dehydratase (RefSeq) — —
Shewanella loihica PV-4 0.44 Shew_1611 sbcB exonuclease I (RefSeq) 0.55 Shew_2046 phosphogluconate dehydratase (RefSeq) — —
Shewanella sp. ANA-3 0.44 Shewana3_2572 sbcB exonuclease I (RefSeq) 0.55 Shewana3_2149 phosphogluconate dehydratase (RefSeq) low > 73
Serratia liquefaciens MT49 0.43 IAI46_17150 exodeoxyribonuclease I 0.53 IAI46_23175 phosphogluconate dehydratase low > 86
Shewanella oneidensis MR-1 0.43 SO2790 sbcB exodeoxyribonuclease I (NCBI ptt file) 0.54 SO2487 edd 6-phosphogluconate dehydratase (NCBI ptt file) low > 76
Rahnella sp. WP5 0.43 EX31_RS17885 exodeoxyribonuclease I 0.52 EX31_RS16630 phosphogluconate dehydratase low > 89
Pseudomonas sp. S08-1 0.43 OH686_18285 Exodeoxyribonuclease I 0.56 OH686_21145 phosphogluconate dehydratase low > 80
Pseudomonas simiae WCS417 0.43 PS417_22575 exonuclease I 0.55 PS417_22690 phosphogluconate dehydratase low > 88
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1823 Exodeoxyribonuclease I (EC 3.1.11.1) 0.53 PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12) low > 87
Pseudomonas fluorescens SBW25 0.43 PFLU_RS24210 exodeoxyribonuclease I 0.55 PFLU_RS24330 phosphogluconate dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS24210 exodeoxyribonuclease I 0.55 PFLU_RS24330 phosphogluconate dehydratase low > 109
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_668 Exodeoxyribonuclease I (EC 3.1.11.1) 0.53 Pf1N1B4_601 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_03720 exonuclease I 0.54 AO353_03420 phosphogluconate dehydratase low > 101
Pseudomonas putida KT2440 0.42 PP_1365 exodeoxyribonuclease I 0.54 PP_1010 phosphogluconate dehydratase — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS01905 exodeoxyribonuclease I 0.55 ABZR86_RS14690 phosphogluconate dehydratase low > 74
Pseudomonas stutzeri RCH2 0.41 Psest_3180 Exonuclease I 0.55 Psest_0849 6-phosphogluconate dehydratase low > 67
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_01689 Exodeoxyribonuclease I 0.51 OHPLBJKB_01878 Phosphogluconate dehydratase low > 73
Escherichia coli ECOR38 0.41 HEPCGN_03270 sbcB exodeoxyribonuclease I 0.51 HEPCGN_04745 edd phosphogluconate dehydratase low > 87
Escherichia coli Nissle 1917 0.41 ECOLIN_RS11910 exodeoxyribonuclease I 0.51 ECOLIN_RS10310 phosphogluconate dehydratase — —
Escherichia coli BW25113 0.41 b2011 sbcB exonuclease I (NCBI) 0.51 b1851 edd phosphogluconate dehydratase (NCBI) low > 76
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07470 sbcB exodeoxyribonuclease I 0.54 OKGIIK_14370 edd phosphogluconate dehydratase — —
Escherichia fergusonii Becca 0.41 EFB2_01845 Exodeoxyribonuclease I 0.51 EFB2_02092 Phosphogluconate dehydratase low > 86
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0545 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) 0.52 EX28DRAFT_0705 6-phosphogluconate dehydratase (EC 4.2.1.12) low > 76
Escherichia coli ECRC99 0.41 KEDOAH_03585 sbcB exodeoxyribonuclease I 0.51 KEDOAH_01765 edd phosphogluconate dehydratase — —
Pseudomonas sp. RS175 0.41 PFR28_03441 Exodeoxyribonuclease I 0.53 PFR28_00561 Phosphogluconate dehydratase low > 88
Escherichia coli ECRC101 0.41 MCAODC_20375 sbcB exodeoxyribonuclease I 0.51 MCAODC_19065 edd phosphogluconate dehydratase low > 87
Escherichia coli ECRC102 0.41 NIAGMN_22510 sbcB exodeoxyribonuclease I 0.51 NIAGMN_01720 edd phosphogluconate dehydratase — —
Escherichia coli ECRC100 0.41 OKFHMN_24565 sbcB exodeoxyribonuclease I 0.51 OKFHMN_26340 edd phosphogluconate dehydratase low > 80
Escherichia coli ECRC98 0.41 JDDGAC_28675 sbcB exodeoxyribonuclease I 0.51 JDDGAC_00915 edd phosphogluconate dehydratase low > 86
Escherichia coli ECRC62 0.41 BNILDI_14790 sbcB exodeoxyribonuclease I 0.51 BNILDI_15645 edd phosphogluconate dehydratase low > 75
Escherichia coli ECOR27 0.41 NOLOHH_15890 sbcB exodeoxyribonuclease I 0.51 NOLOHH_16850 edd phosphogluconate dehydratase low > 75
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_5506 Exodeoxyribonuclease I (EC 3.1.11.1) 0.53 Pf6N2E2_2898 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Escherichia coli BL21 0.41 ECD_01914 exodeoxyribonuclease I; exonuclease I 0.51 ECD_01822 6-phosphogluconate dehydratase low > 61
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_17885 exonuclease I 0.53 AO356_05220 phosphogluconate dehydratase — —
Enterobacter sp. TBS_079 0.41 MPMX20_02997 Exodeoxyribonuclease I 0.52 MPMX20_02756 Phosphogluconate dehydratase low > 85
Rhodanobacter denitrificans MT42 0.41 LRK55_RS17685 exodeoxyribonuclease I 0.55 LRK55_RS07610 phosphogluconate dehydratase — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS17465 exodeoxyribonuclease I 0.55 LRK54_RS07880 phosphogluconate dehydratase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF3917 Exodeoxyribonuclease I (EC 3.1.11.1) 0.51 GFF1630 Phosphogluconate dehydratase (EC 4.2.1.12) low > 78
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_06240 exodeoxyribonuclease I 0.47 CSW01_01480 phosphogluconate dehydratase low > 62
Alteromonas macleodii MIT1002 0.41 MIT1002_01676 Exodeoxyribonuclease I 0.53 MIT1002_02405 Phosphogluconate dehydratase low > 70
Klebsiella michiganensis M5al 0.41 BWI76_RS18785 exodeoxyribonuclease I 0.51 BWI76_RS18100 phosphogluconate dehydratase low > 92
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4020 Exodeoxyribonuclease I subunit C 0.53 Psyr_1109 6-phosphogluconate dehydratase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4020 Exodeoxyribonuclease I subunit C 0.53 Psyr_1109 6-phosphogluconate dehydratase 0.41 41
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.3329.1 Exodeoxyribonuclease I (EC 3.1.11.1) 0.55 Xcc-8004.2447.1 Phosphogluconate dehydratase (EC 4.2.1.12) low > 74
Lysobacter sp. OAE881 0.37 ABIE51_RS12700 exodeoxyribonuclease I 0.53 ABIE51_RS01610 phosphogluconate dehydratase low > 62

Not shown: 7 genomes with orthologs for GFF339 only; 17 genomes with orthologs for GFF6513 only