Conservation of cofitness between Psest_0161 and Psest_0516 in Pseudomonas stutzeri RCH2

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0161 Membrane-bound metallopeptidase 1.0 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.31 4
Pseudomonas fluorescens SBW25 0.72 PFLU_RS01650 murein hydrolase activator EnvC 0.79 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS01650 murein hydrolase activator EnvC 0.79 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas simiae WCS417 0.71 PS417_01600 peptidase M23 0.79 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.43 10
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_12110 peptidase M23 0.78 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.49 11
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1618 Lipoprotein NlpD 0.79 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2E2 0.70 Pf6N2E2_3834 Lipoprotein NlpD 0.79 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.36 39
Pseudomonas sp. RS175 0.69 PFR28_04937 Murein hydrolase activator EnvC 0.80 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.35 21
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_09775 peptidase M23 0.79 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.55 9
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_354 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.79 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_4886 Peptidase M23B 0.79 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.54 3
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_4886 Peptidase M23B 0.79 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.47 21
Pseudomonas sp. S08-1 0.67 OH686_14650 Murein hydrolase activator EnvC 0.72 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas putida KT2440 0.64 PP_5057 Peptidase, M23/M37 family 0.78 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.29 6
Marinobacter adhaerens HP15 0.29 HP15_3006 peptidase M23B 0.55 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0705 Membrane-bound metallopeptidase 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Shewanella loihica PV-4 0.26 Shew_3807 peptidase M23B (RefSeq) 0.44 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.67 4
Shewanella sp. ANA-3 0.26 Shewana3_0050 peptidase M23B (RefSeq) 0.44 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.60 20
Shewanella amazonensis SB2B 0.25 Sama_0059 M24/M37 family peptidase (RefSeq) 0.43 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Shewanella oneidensis MR-1 0.25 SO0048 peptidase, M23/M37 family (NCBI ptt file) 0.44 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Dickeya dianthicola 67-19 0.25 HGI48_RS00780 murein hydrolase activator EnvC 0.43 HGI48_RS09435 serine hydrolase low > 71
Dickeya dianthicola ME23 0.24 DZA65_RS00835 murein hydrolase activator EnvC 0.42 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Dickeya dadantii 3937 0.24 DDA3937_RS20420 murein hydrolase activator EnvC 0.42 DDA3937_RS09420 serine hydrolase low > 74
Dechlorosoma suillum PS 0.24 Dsui_1271 membrane-bound metallopeptidase 0.48 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Escherichia coli ECOR38 0.24 HEPCGN_14570 envC murein hydrolase activator EnvC 0.42 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF397 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.41 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Escherichia fergusonii Becca 0.24 EFB2_00197 Murein hydrolase activator EnvC 0.42 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli Nissle 1917 0.23 ECOLIN_RS20620 murein hydrolase activator EnvC 0.42 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC102 0.23 NIAGMN_13490 envC murein hydrolase activator EnvC 0.42 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BL21 0.23 ECD_03471 activator of AmiB,C murein hydrolases, septal ring factor 0.42 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a — —
Escherichia coli ECRC101 0.23 OKFHMN_15730 envC murein hydrolase activator EnvC 0.42 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC99 0.23 KEDOAH_12420 envC murein hydrolase activator EnvC 0.42 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC98 0.23 JDDGAC_19355 envC murein hydrolase activator EnvC 0.42 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC62 0.23 BNILDI_03905 envC murein hydrolase activator EnvC 0.42 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Lysobacter sp. OAE881 0.23 ABIE51_RS19260 peptidoglycan DD-metalloendopeptidase family protein 0.46 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Escherichia coli ECRC101 0.23 MCAODC_06240 envC murein hydrolase activator EnvC 0.42 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_00086 Murein hydrolase activator EnvC 0.42 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli BW25113 0.23 b3613 yibP putative membrane protein (VIMSS) 0.42 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli ECOR27 0.23 NOLOHH_07610 envC murein hydrolase activator EnvC 0.42 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 57
Enterobacter sp. TBS_079 0.23 MPMX20_00120 Murein hydrolase activator EnvC 0.41 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Klebsiella michiganensis M5al 0.23 BWI76_RS27235 murein hydrolase activator EnvC 0.44 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Enterobacter asburiae PDN3 0.23 EX28DRAFT_3864 Membrane-bound metallopeptidase 0.41 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Erwinia tracheiphila SCR3 0.23 LU632_RS21895 envC murein hydrolase activator EnvC 0.42 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.81 51
Alteromonas macleodii MIT1002 0.23 MIT1002_00489 Septal ring factor 0.46 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Pectobacterium carotovorum WPP14 0.23 HER17_RS20750 murein hydrolase activator EnvC 0.43 HER17_RS12545 serine hydrolase low > 75
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS00825 protease 0.42 HSERO_RS21530 cytochrome C550 0.34 19
Serratia liquefaciens MT49 0.22 IAI46_24715 murein hydrolase activator EnvC 0.41 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.88 2
Rahnella sp. WP5 0.22 EX31_RS14365 murein hydrolase activator EnvC 0.42 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Pantoea sp. MT58 0.22 IAI47_00720 murein hydrolase activator EnvC 0.42 IAI47_13090 serine hydrolase low > 76
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.29.1 Cell wall endopeptidase, family M23/M37 0.44 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.54 10
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_01735 peptidase M23 0.46 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Castellaniella sp019104865 MT123 0.17 ABCV34_RS14275 peptidoglycan DD-metalloendopeptidase family protein 0.45 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.43 21
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_12915 Peptidase M23 0.46 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS10955 peptidoglycan DD-metalloendopeptidase family protein 0.47 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter denitrificans MT42 0.16 LRK55_RS10660 peptidoglycan DD-metalloendopeptidase family protein 0.47 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS13355 peptidoglycan DD-metalloendopeptidase family protein 0.47 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Agrobacterium fabrum C58 0.09 Atu2775 hypothetical protein 0.26 Atu1499 penicillin binding protein — —
Azospirillum sp. SherDot2 0.08 MPMX19_01938 hypothetical protein 0.37 MPMX19_05873 D-alanyl-D-alanine carboxypeptidase DacA low > 112

Not shown: 5 genomes with orthologs for Psest_0161 only; 25 genomes with orthologs for Psest_0516 only