| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_14335 | | lysine transporter LysE | 1.0 | PS417_20155 | | 23S rRNA methyltransferase | 0.18 | 13 |
| Pseudomonas fluorescens SBW25 | 0.97 | PFLU_RS16225 | | LysE family translocator | 0.94 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.97 | PFLU_RS16225 | | LysE family translocator | 0.94 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas putida KT2440 | 0.71 | PP_3405 | | conserved membrane protein of unknown function | 0.69 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.70 | Psyr_3234 | | Lysine exporter protein (LYSE/YGGA) | 0.76 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.70 | Psyr_3234 | | Lysine exporter protein (LYSE/YGGA) | 0.76 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_2315 | | Transporter, LysE family | 0.84 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.67 | AO353_19400 | | lysine transporter LysE | 0.82 | AO353_02715 | | 23S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.67 | Pf1N1B4_193 | | Transporter, LysE family | 0.87 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas sp. S08-1 | 0.65 | OH686_00600 | | Transporter, LysE family | 0.73 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.58 | AO356_20945 | | lysine transporter LysE | 0.84 | AO356_19055 | | 23S rRNA methyltransferase | low | > 104 |
| Pseudomonas sp. RS175 | 0.58 | PFR28_02911 | | Cysteine/O-acetylserine efflux protein | 0.84 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.57 | Pf6N2E2_6076 | | Transporter, LysE family | 0.85 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.56 | RR42_RS17900 | | lysine transporter LysE | 0.30 | RR42_RS13170 | | 23S rRNA methyltransferase | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS21565 | | lysine transporter LysE | 0.32 | BPHYT_RS09125 | | 23S rRNA methyltransferase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS18185 | | LysE family translocator | 0.32 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_01576 | | Threonine/homoserine/homoserine lactone efflux protein | 0.33 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 103 |
| Sinorhizobium meliloti 1021 | 0.54 | SMc01425 | | hypothetical protein | 0.14 | SMc00974 | | RNA methyltransferase | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.50 | Ga0059261_0034 | | Putative threonine efflux protein | 0.12 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | low | > 68 |
| Rhizobium sp. OAE497 | 0.48 | ABIE40_RS11480 | | LysE family translocator | 0.16 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | low | > 107 |
| Shewanella oneidensis MR-1 | 0.47 | SO1716 | | transporter, LysE family (NCBI ptt file) | 0.36 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_2742 | | lysine exporter protein LysE/YggA (RefSeq) | 0.35 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.47 | Shew_1684 | | lysine exporter protein LysE/YggA (RefSeq) | 0.37 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_08610 | | LysE family translocator | 0.41 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.43 | Dshi_2478 | | Lysine exporter protein (LYSE/YGGA) (RefSeq) | 0.13 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | low | > 64 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS07375 | | LysE family translocator | 0.35 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS09035 | | lysine transporter LysE | 0.29 | HSERO_RS14825 | | 23S rRNA methyltransferase | low | > 78 |
| Phaeobacter inhibens DSM 17395 | 0.37 | PGA1_c30520 | | translocator protein, LysE family | 0.13 | PGA1_c34810 | | putative RNA methyltransferase | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1402 | | Putative threonine efflux protein | 0.67 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 67 |
| Rahnella sp. WP5 | 0.34 | EX31_RS05815 | | LysE family translocator | 0.34 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 89 |
| Pantoea sp. MT58 | 0.34 | IAI47_01990 | | LysE family translocator | 0.36 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.34 | 69 |
| Serratia liquefaciens MT49 | 0.34 | IAI46_00170 | | LysE family translocator | 0.36 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.34 | LU632_RS22775 | | LysE family translocator | 0.35 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 74 |
| Dickeya dianthicola 67-19 | 0.33 | HGI48_RS19540 | | LysE family translocator | 0.34 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.33 | HER17_RS01940 | | LysE family translocator | 0.35 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Dickeya dadantii 3937 | 0.33 | DDA3937_RS19420 | | LysE family translocator | 0.35 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 74 |
| Shewanella amazonensis SB2B | 0.30 | Sama_2015 | | hypothetical protein (RefSeq) | 0.36 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 62 |
| Enterobacter asburiae PDN3 | 0.25 | EX28DRAFT_3331 | | Putative threonine efflux protein | 0.34 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.23 | OHPLBJKB_01128 | | Cysteine/O-acetylserine efflux protein | 0.35 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 73 |
| Escherichia coli BW25113 | 0.23 | b2578 | yfiK | neutral amino-acid efflux system (NCBI) | 0.35 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.22 | ECOLIN_RS14590 | | cysteine/O-acetylserine transporter | 0.35 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 55 |
| Escherichia fergusonii Becca | 0.22 | EFB2_01318 | | Cysteine/O-acetylserine efflux protein | 0.35 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Escherichia coli BL21 | 0.22 | ECD_02472 | | cysteine and O-acetylserine exporter | 0.35 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECOR27 | 0.22 | NOLOHH_13020 | eamB | cysteine/O-acetylserine transporter | 0.35 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Escherichia coli ECRC62 | 0.22 | BNILDI_11825 | eamB | cysteine/O-acetylserine transporter | 0.35 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_20475 | eamB | cysteine/O-acetylserine transporter | 0.36 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 87 |
| Escherichia coli ECRC99 | 0.21 | KEDOAH_06870 | eamB | cysteine/O-acetylserine transporter | 0.35 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia coli ECRC102 | 0.21 | NIAGMN_19120 | eamB | cysteine/O-acetylserine transporter | 0.35 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia coli ECRC100 | 0.21 | OKFHMN_21350 | eamB | cysteine/O-acetylserine transporter | 0.35 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Escherichia coli ECRC101 | 0.21 | MCAODC_11880 | eamB | cysteine/O-acetylserine transporter | 0.35 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 87 |
| Escherichia coli ECRC98 | 0.21 | JDDGAC_25015 | eamB | cysteine/O-acetylserine transporter | 0.35 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.20 | GFF2102 | | Transporter, LysE family | 0.35 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.19 | GFF1750 | | Transporter, LysE family | 0.28 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.18 | Ac3H11_1362 | | Transporter, LysE family | 0.28 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 79 |
| Rhodanobacter denitrificans FW104-10B01 | 0.17 | LRK54_RS14635 | | LysE family translocator | 0.36 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.17 | LRK55_RS14350 | | LysE family translocator | 0.36 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 63 |
| Variovorax sp. SCN45 | 0.16 | GFF6887 | | Transporter, LysE family | 0.29 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | low | > 127 |
Not shown: 3 genomes with orthologs for PS417_14335 only; 42 genomes with orthologs for PS417_20155 only